Glyma10g27910 - SoyBase

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Report for Sequence Feature Glyma10g27910

Feature Type:	gene_model
Chromosome:	Gm10
Start:	36717885
stop:	36720538
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46970	AT	Annotation by Michelle Graham. TAIR10: phytochrome interacting factor 3-like 1 \| chr2:19295617-19297678 REVERSE LENGTH=416	SoyBase	E_val: 2.00E-36	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009641	GO-bp	Annotation by Michelle Graham. GO Biological Process: shade avoidance	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG4304	KOG	Transcriptional repressors of the hairy/E(spl) family (contains HLH)	JGI		ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7KUN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor SPATULA n=1 Tax=Medicago truncatula RepID=G7KUN6_MEDTR	SoyBase	E_val: 2.00E-63	ISS
UniRef100_I1LAU4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LAU4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g27910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g138800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g27910

Limit To All Plant Sequences

>Glyma10g27910.3   sequence type=transcript   gene model=Glyma10g27910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGTGGACACGATGCGACACTAGCTCAATTTTACATTGCTCAATGTACAACCTCAACAGTTATGAGGAGGACCACTAGATGTTATTATTAATTTAATTAACTAATTTCAGAACTATGATCATCCCTTCAATATTTCCTTATAACGTAATATTTTGCTTTTGTCCACTTCCATCCCCTCTCCATTTCAATACTACTAGTACTGCAAACTAGTATAATATAATTGTAGCTTCTTTATTTAGTATCTTTGTATCTGTTCTAGCTAGTGCTGATTATCAGTTACATTAGTCCTCACAAGTGAAACCGGTTACAATACAGCATATAGGTGAGCTTGTGTTGCACGCAGTTTGGTTTTTCTGTGAGCACCTGAAATTTCTTTTGGAAGATAATGTAATTATTTAATGGCTGCTGAGAAGATGCCTGATTCCACCAAACCAGGGATGACTAGAAGCACCTCTTATCTAGACTCCATGCAAGTTATTGCTACTTAAAGATTCGATTCTATTCTCTTTTTATATTCAACAATTATGGCAAAGGTTCCCTTGAGCTGGTATGGGAAAATGGTCAACTTCACGTGCAGCAAGGAGGTTCATCATCAACATCAAGTGTCGTCACACGAATGACTCCCTCGTGCGAAGGTTCCTTCAATGCAAAAAGTGCAAGGTTAAGCTCACTATACTCCCTCATGGACTTCCCAGTTCAAAGGGACTCTGCCTTGGACAATTCTCAACCAAATTCTCATCAAAGCAATGACCAAAATTCTGGTAAGTTTGCAAAGGCTGCTAATTCTAGCAGCAAAGGTCTTGATCGTTCCTTAGTGATAAACTCACCTAAAGGATCACCGGGAAGACAAAAGAACCCTTTAAATTCTGATACATCAAACATGGTTCCAAGAAGTGAGGAAACAACACCTCCTGATGAGCAATCTGAAGCTGTTGGTCATGATAGTATTCATGGATCTCGTGGTCAATATTTTAACCAAACCTCAAGCTCAGCAAGACATAGAGCAAAGGGAAAAGCTCATGATACTAAACAAAAATACTGTGATGAAGGCTTGTTGGAATCTTCTTCCCTATGCTCCATTGGAGCCTCAAATAACAGAAACGTGTGTAGCAGGACACATGATGATATCGATGACTCAACGTATTTAAGCAATAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTTGGGAAGGCACCGGTGTCAAGAGAAGTAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTATATTGAAGGAGCTCATACCAAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATGATGTCAATGGGTGCTGGATTTTGTATGCCGTTCATGATGCTACCTAATGCTGCTCATCATATGATGAACACACCCCATTTACATCAGTTAATGGGACTTGGTATGGGGTTCAGGCCAGGCACAGCCATGCCTTGTAGCCTCCCTCAGTTCCCTATTACACCTTTGCATGGTATCACTGACAACAGAGTTCACATGTTTGGTTTCCCTAACCAAGTTCCACCCATGCCAATTTCTCATGCACCTTTCATTCCAATGCTTGGAAATCCTTCTACACAACCCACCCCTCTTGCAACTAGCACAAACATCAACCTGGCGGAAAACCCTGCTTCTTCCCAGTTAACTACTCTAATGGCCTCGTCCCCCAAGAACTTGTTTATTAGTGGACAAGCTGAATATGCAACAAAGCAATAAGCACCGAGTCAGGTTTCCCTTCCCCACTAGCCATCAATTTGTATCCCAAAAAGAGAAGAAATAAAATTTAGCATGTCTAAGGCAATTGCTAGAAAAGTCGATTTAAAGATTGTGGGATCTGATAATAAATATTCAGCAACTAGACACTGACACTTCATGGTTGGATGCTTTACTGCTTAATTTGAAACACTGATGAAAATGGTCATTGGATTCATTGGAAGCATAGAAGTATGGTTCTTAGTTATCATCCAGTACCATTCTGTATGAATTATTCAAATTAAGGTGTCTTATTAGGCGATGAAGGCTTCTAATAACAACACAACATTTAGAAGTTAAAACTATTGCCAAGTGCTTCATTCACTAACATTAGTTGTGATGTGCATGCTAA

Coding sequences of Glyma10g27910

Limit To All Plant Sequences

>Glyma10g27910.2   sequence type=CDS   gene model=Glyma10g27910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGAGAAGATGCCTGATTCCACCAAACCAGGGATGACTAGAAGCACCTCTTATCTAGACTCCATTTATGGCAAAGGTTCCCTTGAGCTGGTATGGGAAAATGGTCAACTTCACGTGCAGCAAGGAGGTTCATCATCAACATCAAGTGTCGTCACACGAATGACTCCCTCGTGCGAAGGTTCCTTCAATGCAAAAAGTGCAAGGTTAAGCTCACTATACTCCCTCATGGACTTCCCAGTTCAAAGGGACTCTGCCTTGGACAATTCTCAACCAAATTCTCATCAAAGCAATGACCAAAATTCTGGTAAGTTTGCAAAGGCTGCTAATTCTAGCAGCAAAGGTCTTGATCGTTCCTTAGTGATAAACTCACCTAAAGGATCACCGGGAAGACAAAAGAACCCTTTAAATTCTGATACATCAAACATGGTTCCAAGAAGTGAGGAAACAACACCTCCTGATGAGCAATCTGAAGCTGTTGGTCATGATAGTATTCATGGATCTCGTGGTCAATATTTTAACCAAACCTCAAGCTCAGCAAGACATAGAGCAAAGGGAAAAGCTCATGATACTAAACAAAAATACTGTGATGAAGGCTTGTTGGAATCTTCTTCCCTATGCTCCATTGGAGCCTCAAATAACAGAAACGTGTGTAGCAGGACACATGATGATATCGATGACTCAACGTATTTAAGCAATAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTTGGGAAGGCACCGGTGTCAAGAGAAGTAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTATATTGAAGGAGCTCATACCAAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATGATGTCAATGGGTGCTGGATTTTGTATGCCGTTCATGATGCTACCTAATGCTGCTCATCATATGATGAACACACCCCATTTACATCAGTTAATGGGACTTGGTATGGGGTTCAGGCCAGGCACAGCCATGCCTTGTAGCCTCCCTCAGTTCCCTATTACACCTTTGCATGGTATCACTGACAACAGAGTTCACATGTTTGGTTTCCCTAACCAAGTTCCACCCATGCCAATTTCTCATGCACCTTTCATTCCAATGCTTGGAAATCCTTCTACACAACCCACCCCTCTTGCAACTAGCACAAACATCAACCTGGCGGAAAACCCTGCTTCTTCCCAGTTAACTACTCTAATGGCCTCGTCCCCCAAGAACTTGTTTATTAGTGGACAAGCTGAATATGCAACAAAGCAATAA

>Glyma10g27910.3   sequence type=CDS   gene model=Glyma10g27910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCCCTCGTGCGAAGGTTCCTTCAATGCAAAAAGTGCAAGGTTAAGCTCACTATACTCCCTCATGGACTTCCCAGTTCAAAGGGACTCTGCCTTGGACAATTCTCAACCAAATTCTCATCAAAGCAATGACCAAAATTCTGGTAAGTTTGCAAAGGCTGCTAATTCTAGCAGCAAAGGTCTTGATCGTTCCTTAGTGATAAACTCACCTAAAGGATCACCGGGAAGACAAAAGAACCCTTTAAATTCTGATACATCAAACATGGTTCCAAGAAGTGAGGAAACAACACCTCCTGATGAGCAATCTGAAGCTGTTGGTCATGATAGTATTCATGGATCTCGTGGTCAATATTTTAACCAAACCTCAAGCTCAGCAAGACATAGAGCAAAGGGAAAAGCTCATGATACTAAACAAAAATACTGTGATGAAGGCTTGTTGGAATCTTCTTCCCTATGCTCCATTGGAGCCTCAAATAACAGAAACGTGTGTAGCAGGACACATGATGATATCGATGACTCAACGTATTTAAGCAATAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTTGGGAAGGCACCGGTGTCAAGAGAAGTAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTATATTGAAGGAGCTCATACCAAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATGATGTCAATGGGTGCTGGATTTTGTATGCCGTTCATGATGCTACCTAATGCTGCTCATCATATGATGAACACACCCCATTTACATCAGTTAATGGGACTTGGTATGGGGTTCAGGCCAGGCACAGCCATGCCTTGTAGCCTCCCTCAGTTCCCTATTACACCTTTGCATGGTATCACTGACAACAGAGTTCACATGTTTGGTTTCCCTAACCAAGTTCCACCCATGCCAATTTCTCATGCACCTTTCATTCCAATGCTTGGAAATCCTTCTACACAACCCACCCCTCTTGCAACTAGCACAAACATCAACCTGGCGGAAAACCCTGCTTCTTCCCAGTTAACTACTCTAATGGCCTCGTCCCCCAAGAACTTGTTTATTAGTGGACAAGCTGAATATGCAACAAAGCAATAA

Predicted protein sequences of Glyma10g27910

Limit To All Plant Sequences

>Glyma10g27910.2   sequence type=predicted peptide   gene model=Glyma10g27910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEKMPDSTKPGMTRSTSYLDSIYGKGSLELVWENGQLHVQQGGSSSTSSVVTRMTPSCEGSFNAKSARLSSLYSLMDFPVQRDSALDNSQPNSHQSNDQNSGKFAKAANSSSKGLDRSLVINSPKGSPGRQKNPLNSDTSNMVPRSEETTPPDEQSEAVGHDSIHGSRGQYFNQTSSSARHRAKGKAHDTKQKYCDEGLLESSSLCSIGASNNRNVCSRTHDDIDDSTYLSNNDEEPEDVVKEKPAWEGTGVKRSRNAEVHNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLQMMSMGAGFCMPFMMLPNAAHHMMNTPHLHQLMGLGMGFRPGTAMPCSLPQFPITPLHGITDNRVHMFGFPNQVPPMPISHAPFIPMLGNPSTQPTPLATSTNINLAENPASSQLTTLMASSPKNLFISGQAEYATKQ*

>Glyma10g27910.3   sequence type=predicted peptide   gene model=Glyma10g27910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPSCEGSFNAKSARLSSLYSLMDFPVQRDSALDNSQPNSHQSNDQNSGKFAKAANSSSKGLDRSLVINSPKGSPGRQKNPLNSDTSNMVPRSEETTPPDEQSEAVGHDSIHGSRGQYFNQTSSSARHRAKGKAHDTKQKYCDEGLLESSSLCSIGASNNRNVCSRTHDDIDDSTYLSNNDEEPEDVVKEKPAWEGTGVKRSRNAEVHNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLQMMSMGAGFCMPFMMLPNAAHHMMNTPHLHQLMGLGMGFRPGTAMPCSLPQFPITPLHGITDNRVHMFGFPNQVPPMPISHAPFIPMLGNPSTQPTPLATSTNINLAENPASSQLTTLMASSPKNLFISGQAEYATKQ*

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