Glyma10g27890 - SoyBase

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Report for Sequence Feature Glyma10g27890

Feature Type:	gene_model
Chromosome:	Gm10
Start:	36689491
stop:	36695037
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01690	AT	Annotation by Michelle Graham. TAIR10: Flavin containing amine oxidoreductase family \| chr4:729929-732309 FORWARD LENGTH=537	SoyBase	E_val: 0	ISS
GO:0006779	GO-bp	Annotation by Michelle Graham. GO Biological Process: porphyrin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004729	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1276	KOG	Protoporphyrinogen oxidase	JGI		ISS
PTHR10742	Panther	AMINE OXIDASE	JGI		ISS
PTHR10742:SF16	Panther	AMINE OXIDASE-RELATED	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
UniRef100_B9RN34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protoporphyrinogen oxidase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RN34_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0000037975	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000037975 related cluster n=1 Tax=unknown RepID=UPI0000037975	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g27890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g138600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g27890

Limit To All Plant Sequences

>Glyma10g27890.1   sequence type=CDS   gene model=Glyma10g27890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCGTCTTCAACGAGATCCTATTCCCGCCGAACCAAACCCTTCTTCGCCCCTCCCTCCATTCCCCAACCTCTTTCTTCACCTCTCCCACTCGAAAATTCCCTCGCTCTCGCCCTAACCCTATTCTACGCTGCTCCATTGCGGAGGAATCCACCGCGTCTCCGCCCAAAACCAGAGACTCCGCCCCCGTGGACTGCGTCGTCGTCGGCGGAGGCGTCAGCGGCCTCTGCATCGCCCAGGCCCTCGCCACCAAACACGCCAATGCCAACGTCGTCGTCACGGAGGCCCGAGACCGCGTCGGCGGCAACATCACCACGATGGAGAGGGACGGATACCTCTGGGAAGAAGGCCCCAACAGCTTCCAGCCTTCTGATCCAATGCTCACCATGGTGGTGGACAGTGGTTTAAAGGATGAGCTTGTTTTGGGGGATCCTGATGCACCTCGGTTTGTGTTGTGGAACAGGAAGTTGAGGCCGGTGCCCGGGAAGCTGACTGATTTGCCTTTCTTTGACTTGATGAGCATTGGTGGCAAAATCAGGGCTGGCTTTGGTGCGCTTGGAATTCGGCCTCCTCCTCCAGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGGGGTCTATGCAGGCGATCCTTCAAAATTAAGTATGAAAGCAGCATTCGGGAAAGTTTGGAAGCTGGAAAAAAATGGTGGTAGCATTATTGGTGGAACTTTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACATATGAAACACCAGAAGGAGTGGTTTCTTTGCAGTGCAAAACTGTTGTCCTGACCATTCCTTCCTATGTTGCTAGTACATTGCTGCGTCCTCTGTCTGCTGCTGCTGCAGATGCACTTTCAAAGTTTTATTACCCTCCAGTTGCTGCAGTTTCCATATCCTATCCAAAAGAAGCTATTAGATCAGAATGCTTGATAGATGGTGAGTTGAAGGGGTTTGGTCAATTGCATCCACGTAGCCAAGGAGTGGAAACATTAGGAACTATATACAGCTCATCACTATTCCCCAACCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTATAAACCCAAATGCCCAGGATCCATTTGTAGTGGGGGTGAGACTGTGGCCTCAAGCTATTCCACAGTTCTTAGTTGGCCATCTTGATCTTCTAGATGTTGCTAAAGCTTCTATCAGAAATACTGGGTTTGAAGGGCTCTTCCTTGGGGGTAATTATGTGTCTGGTGTTGCCTTGGGACGATGCGTTGAGGGAGCCTATGAGGTAGCAGCTGAAGTAAACGATTTTCTCACAAATAGAGTGTACAAATAG

Predicted protein sequences of Glyma10g27890

Limit To All Plant Sequences

>Glyma10g27890.1   sequence type=predicted peptide   gene model=Glyma10g27890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSVFNEILFPPNQTLLRPSLHSPTSFFTSPTRKFPRSRPNPILRCSIAEESTASPPKTRDSAPVDCVVVGGGVSGLCIAQALATKHANANVVVTEARDRVGGNITTMERDGYLWEEGPNSFQPSDPMLTMVVDSGLKDELVLGDPDAPRFVLWNRKLRPVPGKLTDLPFFDLMSIGGKIRAGFGALGIRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEKNGGSIIGGTFKAIQERNGASKPPRDPRLPKPKGQTVGSFRKGLTMLPDAISARLGNKVKLSWKLSSISKLDSGEYSLTYETPEGVVSLQCKTVVLTIPSYVASTLLRPLSAAAADALSKFYYPPVAAVSISYPKEAIRSECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPPGRVLLLNYIGGATNTGILSKTDSELVETVDRDLRKILINPNAQDPFVVGVRLWPQAIPQFLVGHLDLLDVAKASIRNTGFEGLFLGGNYVSGVALGRCVEGAYEVAAEVNDFLTNRVYK*

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