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Report for Sequence Feature Glyma10g27650

Feature Type:gene_model
Chromosome:Gm10
Start:36348528
stop:36350574
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g27650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51530AT Annotation by Michelle Graham. TAIR10: F-box/RNI-like/FBD-like domains-containing protein | chr3:19112873-19114497 REVERSE LENGTH=455 SoyBaseE_val: 7.00E-14ISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00646PFAM F-box domain JGI ISS
UniRef100_A2Q620UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-like F-box; Agenet n=1 Tax=Medicago truncatula RepID=A2Q620_MEDTR SoyBaseE_val: 3.00E-62ISS
UniRef100_I1LAS6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAS6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g27650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g136700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g27650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g27650
>Glyma10g27650.5   sequence type=CDS   gene model=Glyma10g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAGGAAAAGAAACAAAGGGGACAAGAAGTAAAGGAGACACAGAAGAGGAGAGGGACAGGTTGGGTAAGTTGCCTGAAAATGTTCTGCTCCATATAATGAATTTCATGGAAACAAGACATGCTGTTCAGACTTGTGTCTTGTCTAAACGATGGAATAACCTTTGGAAAAGTCTCACTACTCTCACTTTCCATCACTTTCGAAGAATCAACGTTAACAAATTTGTATCTCGGGTTCTGTCAGACCGGGATGATTCCATTTCACTACTTAATCTTTGTTTATCCGGCCTCGATCAAGCTGAATCCGGACACTTGATTTGGGCCACGAGATATGCTGCCTCACACAATGTCCAGCAATTGACGATCCACTTACCTTACAAATTTACAAACATACTCAATTGTTTTGACCCTCTCACTTTGTCCTGTCCGTCCTTGACATCCCTTGAGCTTCACAAAGAATGTTGTGGCCCTCCTTTGGAAATTCCAAAATCTCTGCAGTTACCAGCGTTGAAAAGCTTGCTCTTGGAATATGTCAGTTTTACTGCAACTGACAATGGCTGCGCCGAACCCTTTTCAACCTGCCACTCGCTAAATACTTTGGTCCTATGCTCTTTGCACATTGATGCAAAAGTACTCTTCATATCTAATTCTAACCTTTCCATTTTGAACCTGAAAGACCTGAAGATCTTGGACACCATTCAACAAAAAATTGTGTTTTCTACTCCAAATCTTAGTTCTCTCACAATCACCAATTATTTAGGTTTCAGTCATCAACCATTCTCCTCCACATGCAATCTTTCGTGTCTTGAAGAAGGAACTATTCACACCACTACTTATATATCTTACTCGGTCTTCATAGGCTGGCTGCAACTCTTCGCTAATGTAAAGATATTGAAACTTTCTTACGATACCCTGAGAATACTGAAAGATCTATCAAATCATGCTACAACAAGAACTCAACCTCCGTGCTTTGCTAGATTGGAGTCATTGAAAGTGAAAATTATCCCATACCTAGAAATGTCTGATGAAGAAGTAAACAGGGCAGTGGAGTACTTCAGAACTCTACTAATCAGAGTTGCTGTCATAAATCGCTGGAACTTACAACAATGTGCGTAA
Predicted protein sequences of Glyma10g27650
>Glyma10g27650.5   sequence type=predicted peptide   gene model=Glyma10g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEGKETKGTRSKGDTEEERDRLGKLPENVLLHIMNFMETRHAVQTCVLSKRWNNLWKSLTTLTFHHFRRINVNKFVSRVLSDRDDSISLLNLCLSGLDQAESGHLIWATRYAASHNVQQLTIHLPYKFTNILNCFDPLTLSCPSLTSLELHKECCGPPLEIPKSLQLPALKSLLLEYVSFTATDNGCAEPFSTCHSLNTLVLCSLHIDAKVLFISNSNLSILNLKDLKILDTIQQKIVFSTPNLSSLTITNYLGFSHQPFSSTCNLSCLEEGTIHTTTYISYSVFIGWLQLFANVKILKLSYDTLRILKDLSNHATTRTQPPCFARLESLKVKIIPYLEMSDEEVNRAVEYFRTLLIRVAVINRWNLQQCA*






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