SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33385 | AT | Annotation by Michelle Graham. TAIR10: actin-related protein C2B | chr2:14147604-14149769 REVERSE LENGTH=374 | SoyBase | E_val: 2.00E-128 | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0030833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005856 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton | SoyBase | N/A | ISS |
| GO:0005885 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Arp2/3 protein complex | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| KOG2826 | KOG | Actin-related protein Arp2/3 complex, subunit ARPC2 | JGI | ISS | |
| PTHR12058 | Panther | ARP COMPLEX-RELATED | JGI | ISS | |
| PF04045 | PFAM | Arp2/3 complex, 34 kD subunit p34-Arc | JGI | ISS | |
| UniRef100_I1LAS1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LAS1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01HD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0157K09-H0214G12.22 protein n=3 Tax=Oryza sativa RepID=Q01HD5_ORYSA | SoyBase | E_val: 2.00E-97 | ISS |
|
Glyma10g27630 not represented in the dataset |
Glyma10g27630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g21550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g136400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g27630.3 sequence type=transcript gene model=Glyma10g27630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAACGGTTGAGAGGGCCGGATCTCAAATTAAATTGTATGTTCACTTTAACAATACAAAATATTCACACAATCTCAGAAGAGGAGGAGAGATCGAGTTATATAAGAATGGCATGCATAGAGAGAGCATCTCCAGCACTGAAGCAAATACTGCTCAAACTTTGCTGGTAATAAGAGTGCTGAGAAGCCCCTGGAGATTGATCATCACTTATATGAATTTGGGTCAGTGGAGTACCATATTCAGTCTCAAGCCTCTAATCCACAAGTAGCTTACTTGTCAATATCAATGCCACCTCTATGCCATGGAGTCATACAAAATGAACTTTCTTCTTACACCATTGAAATGGTAAAGGGTCTTTGTCCAAATGTTGTGGGGATTGCAGAGCCAGCCAAAGAAGGATATCAACTTACTCTGAAGCTTAACCTTAATCAGATTCCACAAAACAAAGACTATGATAAGGTCATTAAGGAGATTTCAACAGTACATTCAGTAATTCTGAGTTCACAGCTGAAAGAAATATTGTGGAACGTGAATTTTGATGATGCACTTCAGGGGATGTACAAACCCATCAAACTAGTCTACCATCCAAAAGACCATTTCTTTCTCATTAGGCAGCCACAAAGAATCATAGCGGTATTCCCAATTCGTTTTAGAGAAAAGTCAGATGTGATCATTGCAACGGCTTTCTTTCAGGAGCTTGTGGATGTGGGAAGTTCAGATAAATGGGCCAAGGTACCACCTTGCAACTGGTCAGCCATTCCTCCACCAGAGTTAAGAGGAGAAGCTTTTGAGGATTTGAGTACCAATGGAGGGTTTTTTACTTTCGATATCTCTTCTCGCCATGTTGAAGGCAATAGGCTAGACAAAACTGTCTGGAATCTATTAAATTTTAATGCCTATGTTAGATACCATGTAAAGAGCACCAAAGGTTTTATTCAAAGAAGGATGAGGAAGCGTTTGGAAAGTTTAGTTGAGGTCCTGCACCAAACAAACTTAGAAGAAAATGAACAAACCAAACAACATCAAGTATATAGGTACACAAAGAAACTAGTGCGATCAGCAAAGTATGCCGTCTTGAAACAAAGATGGGGCACCTTTGGAAGAAAAATAAAGAGGATCCGTTTCCGACTTAAAATTCATGGATTTACACGATTTCGTCAACAATGGTTTAGGTTCCCAAAATTTTCAACGGGATATACAAAAATAGTGGAAAAATCTGCGTAGTTTTCTTATGTAATATATGCAGTTCATAGAGATGGTTCAAGAAAATAAATACTTCACTGCACTATTTTCTCATGCCTAACTATAAAATTTATTTGGACTTTCGACTATTTGATTGTAAACAAAAAGGAGGATATTCATGTCTCTAGAAATCTACCAAATTTGTAATTGTGGAAATATAATGCCAATGTCTAGCAATCATAATGAAGTTTTATACTGAAATGTTTCACACAAGATGAGTATCACTTCAAGAGGGGTTCCATCTAAATGTTTGATAGATTTGAGTATTCAAATAGAG
>Glyma10g27630.2 sequence type=CDS gene model=Glyma10g27630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCACTTTAACAATACAAAATATTCACACAATCTCAGAAGAGGAGGAGAGATCGAGTTATATAAGAATGGCATGCATAGAGAGAGCATCTCCAGCACTGAAGCAAATACTGCTCAAACTTTGCTGTGCTGAGAAGCCCCTGGAGATTGATCATCACTTATATGAATTTGGGTCAGTGGAGTACCATATTCAGTCTCAAGCCTCTAATCCACAAGTAGCTTACTTGTCAATATCAATGCCACCTCTATGCCATGGAGTCATACAAAATGAACTTTCTTCTTACACCATTGAAATGGTAAAGGGTCTTTGTCCAAATGTTGTGGGGATTGCAGAGCCAGCCAAAGAAGGATATCAACTTACTCTGAAGCTTAACCTTAATCAGATTCCACAAAACAAAGACTATGATAAGGTCATTAAGGAGATTTCAACAGTACATTCAGTAATTCTGAGTTCACAGCTGAAAGAAATATTGTGGAACGTGAATTTTGATGATGCACTTCAGGGGATGTACAAACCCATCAAACTAGTCTACCATCCAAAAGACCATTTCTTTCTCATTAGGCAGCCACAAAGAATCATAGCGGTATTCCCAATTCGTTTTAGAGAAAAGTCAGATGTGATCATTGCAACGGCTTTCTTTCAGGAGCTTGTGGATGTGGGAAGTTCAGATAAATGGGCCAAGGTACCACCTTGCAACTGGTCAGCCATTCCTCCACCAGAGTTAAGAGGAGAAGCTTTTGAGGATTTGAGTACCAATGGAGGGTTTTTTACTTTCGATATCTCTTCTCGCCATGTTGAAGGCAATAGGCTAGACAAAACTGTCTGGAATCTATTAAATTTTAATGCCTATGTTAGATACCATGTAAAGAGCACCAAAGGTTTTATTCAAAGAAGGATGAGGAAGCGTTTGGAAAGTTTAGTTGAGGTCCTGCACCAAACAAACTTAGAAGAAAATGAACAAACCAAACAACATCAAGTATATAGGTACACAAAGAAACTAGTGCGATCAGCAAAGTATGCCGTCTTGAAACAAAGATGGGGCACCTTTGGAAGAAAAATAAAGAGGATCCGTTTCCGACTTAAAATTCATGGATTTACACGATTTCGTCAACAATGGTTTAGGTTCCCAAAATTTTCAACGGGATATACAAAAATAGTGGAAAAATCTGCGTAG >Glyma10g27630.3 sequence type=CDS gene model=Glyma10g27630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCACCTCTATGCCATGGAGTCATACAAAATGAACTTTCTTCTTACACCATTGAAATGGTAAAGGGTCTTTGTCCAAATGTTGTGGGGATTGCAGAGCCAGCCAAAGAAGGATATCAACTTACTCTGAAGCTTAACCTTAATCAGATTCCACAAAACAAAGACTATGATAAGGTCATTAAGGAGATTTCAACAGTACATTCAGTAATTCTGAGTTCACAGCTGAAAGAAATATTGTGGAACGTGAATTTTGATGATGCACTTCAGGGGATGTACAAACCCATCAAACTAGTCTACCATCCAAAAGACCATTTCTTTCTCATTAGGCAGCCACAAAGAATCATAGCGGTATTCCCAATTCGTTTTAGAGAAAAGTCAGATGTGATCATTGCAACGGCTTTCTTTCAGGAGCTTGTGGATGTGGGAAGTTCAGATAAATGGGCCAAGGTACCACCTTGCAACTGGTCAGCCATTCCTCCACCAGAGTTAAGAGGAGAAGCTTTTGAGGATTTGAGTACCAATGGAGGGTTTTTTACTTTCGATATCTCTTCTCGCCATGTTGAAGGCAATAGGCTAGACAAAACTGTCTGGAATCTATTAAATTTTAATGCCTATGTTAGATACCATGTAAAGAGCACCAAAGGTTTTATTCAAAGAAGGATGAGGAAGCGTTTGGAAAGTTTAGTTGAGGTCCTGCACCAAACAAACTTAGAAGAAAATGAACAAACCAAACAACATCAAGTATATAGGTACACAAAGAAACTAGTGCGATCAGCAAAGTATGCCGTCTTGAAACAAAGATGGGGCACCTTTGGAAGAAAAATAAAGAGGATCCGTTTCCGACTTAAAATTCATGGATTTACACGATTTCGTCAACAATGGTTTAGGTTCCCAAAATTTTCAACGGGATATACAAAAATAGTGGAAAAATCTGCGTAG
>Glyma10g27630.2 sequence type=predicted peptide gene model=Glyma10g27630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFTLTIQNIHTISEEEERSSYIRMACIERASPALKQILLKLCCAEKPLEIDHHLYEFGSVEYHIQSQASNPQVAYLSISMPPLCHGVIQNELSSYTIEMVKGLCPNVVGIAEPAKEGYQLTLKLNLNQIPQNKDYDKVIKEISTVHSVILSSQLKEILWNVNFDDALQGMYKPIKLVYHPKDHFFLIRQPQRIIAVFPIRFREKSDVIIATAFFQELVDVGSSDKWAKVPPCNWSAIPPPELRGEAFEDLSTNGGFFTFDISSRHVEGNRLDKTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLESLVEVLHQTNLEENEQTKQHQVYRYTKKLVRSAKYAVLKQRWGTFGRKIKRIRFRLKIHGFTRFRQQWFRFPKFSTGYTKIVEKSA* >Glyma10g27630.3 sequence type=predicted peptide gene model=Glyma10g27630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPLCHGVIQNELSSYTIEMVKGLCPNVVGIAEPAKEGYQLTLKLNLNQIPQNKDYDKVIKEISTVHSVILSSQLKEILWNVNFDDALQGMYKPIKLVYHPKDHFFLIRQPQRIIAVFPIRFREKSDVIIATAFFQELVDVGSSDKWAKVPPCNWSAIPPPELRGEAFEDLSTNGGFFTFDISSRHVEGNRLDKTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLESLVEVLHQTNLEENEQTKQHQVYRYTKKLVRSAKYAVLKQRWGTFGRKIKRIRFRLKIHGFTRFRQQWFRFPKFSTGYTKIVEKSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
