Glyma10g27570 - SoyBase

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Report for Sequence Feature Glyma10g27570

Feature Type:	gene_model
Chromosome:	Gm10
Start:	36246211
stop:	36249991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35620	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic initiation factor 4E protein \| chr5:13824946-13826331 REVERSE LENGTH=198	SoyBase	E_val: 6.00E-82	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0009615	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to virus	SoyBase	N/A	ISS
GO:0050687	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response to virus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000340	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA 7-methylguanosine cap binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1670	KOG	Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins	JGI		ISS
PTHR11960	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED	JGI		ISS
PF01652	PFAM	Eukaryotic initiation factor 4E	JGI		ISS
UniRef100_D3TI64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor iso4E n=2 Tax=Phaseolus vulgaris RepID=D3TI64_PHAVU	SoyBase	E_val: 2.00E-125	ISS
UniRef100_I1LAR7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAR7_SOYBN	SoyBase	E_val: 4.00E-151	ISS

Expression Patterns of Glyma10g27570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g27570

Paralog	Evidence	Comments
Glyma20g21493	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g27570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g136100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g27570

Limit To All Plant Sequences

>Glyma10g27570.3   sequence type=transcript   gene model=Glyma10g27570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCAAATACACACGAAAGCCCTCAAAGCATAACCTCACTCGTATTAGCGTTGCTGTGTGAGAGAAAGAGAAATGGCAACAAGCGAAGAAGTGGTTGCGGCGGCGCCGGAGGCAGCCGCGCCGGAGGCAGGGTTGAAGCACAAACTGGAGAGAAAATGGACGTTTTGGTGCGACAACCAATCCAAACCCAAGCAAGGCGCTGCTTGGGGAACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCCGATTTTCACTTGTTCAAGACTGGGATTGACCCTAAATGGGAAGATCCAGAGTGCGCCAATGGAGGAAAGTGGTCTATCACCAGCAACAGCGGCAGGAAGGCTAACCTTGATAACATGTGGCTTGAAACTATGATGGCTTTGATTGGGGAACAATTTGAGGATGCTGAGGACATATGTGGTGTGGTTGCTAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAACATACAACTTTCATGATGATTCTAGAAGCAAAGGAGCAACAAAGGGTCGGTACACCGTATAAACACCGCAGGAGCATCTTCTTGCACTTGTGCTGGGCTGCTGGCAAGGCTGTAATATTTGATATCTTTATCATGTGCCATATGTACTAAGAACATGCTACTACTTTGGTGGGGGGTTAGTTTTATTTTTGTTCACTCACCCCACTTTTGGGTGTTGATACTATCATACTCTTCTCATTTTTGAAATGGTCTGTCAAATTTTTCTTCAGAGTTCATTGGTAGTTTTTTTGGTCACATTCTAAAAGCTTTAAATTTTGAATATGTCGACACAAGTTTAGCATGAGTTTGATGAGTTATTTGTTCAATCATAATTGTGATCGAACCTACATTGTTCTGTTGAGTGTATAACCCTGAGCTAAAATTAAGATGAACTCGAGCTTCATCTAGTTTGGAGTATTCTGTTGTTGATGTGTAAATACATGAAAACGAAGTATATGGTATGGTGATGAGAAATGGTAAGGGAGATAATATAAACC

Coding sequences of Glyma10g27570

Limit To All Plant Sequences

>Glyma10g27570.1   sequence type=CDS   gene model=Glyma10g27570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAAGCGAAGAAGTGGTTGCGGCGGCGCCGGAGGCAGCCGCGCCGGAGGCAGGGTTGAAGCACAAACTGGAGAGAAAATGGACGTTTTGGTGCGACAACCAATCCAAACCCAAGCAAGGCGCTGCTTGGGGAACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCCGATTTTCACTTGTTCAAGACTGGGATTGACCCTAAATGGGAAGATCCAGAGTGCGCCAATGGAGGAAAGTGGTCTATCACCAGCAACAGCGGCAGGAAGGCTAACCTTGATAACATGTGGCTTGAAACTATGATGGCTTTGATTGGGGAACAATTTGAGGATGCTGAGGACATATGTGGTGTGGTTGCTAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGGTTTTTTATTATCTTATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAACATACAACTTTCATGATGATTCTAGAAGCAAAGGAGCAACAAAGGGTCGGTACACCGTATAA

>Glyma10g27570.3   sequence type=CDS   gene model=Glyma10g27570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAAGCGAAGAAGTGGTTGCGGCGGCGCCGGAGGCAGCCGCGCCGGAGGCAGGGTTGAAGCACAAACTGGAGAGAAAATGGACGTTTTGGTGCGACAACCAATCCAAACCCAAGCAAGGCGCTGCTTGGGGAACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCCGATTTTCACTTGTTCAAGACTGGGATTGACCCTAAATGGGAAGATCCAGAGTGCGCCAATGGAGGAAAGTGGTCTATCACCAGCAACAGCGGCAGGAAGGCTAACCTTGATAACATGTGGCTTGAAACTATGATGGCTTTGATTGGGGAACAATTTGAGGATGCTGAGGACATATGTGGTGTGGTTGCTAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAACATACAACTTTCATGATGATTCTAGAAGCAAAGGAGCAACAAAGGGTCGGTACACCGTATAA

Predicted protein sequences of Glyma10g27570

Limit To All Plant Sequences

>Glyma10g27570.1   sequence type=predicted peptide   gene model=Glyma10g27570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSEEVVAAAPEAAAPEAGLKHKLERKWTFWCDNQSKPKQGAAWGTSLRKVYTFDTVEEFWCLYDQVFKPSKLQINADFHLFKTGIDPKWEDPECANGGKWSITSNSGRKANLDNMWLETMMALIGEQFEDAEDICGVVASVRQWQDKLSLWTKTAANEAAQVFYYLMSIGRKWKEIIDVNDKITYNFHDDSRSKGATKGRYTV*

>Glyma10g27570.3   sequence type=predicted peptide   gene model=Glyma10g27570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSEEVVAAAPEAAAPEAGLKHKLERKWTFWCDNQSKPKQGAAWGTSLRKVYTFDTVEEFWCLYDQVFKPSKLQINADFHLFKTGIDPKWEDPECANGGKWSITSNSGRKANLDNMWLETMMALIGEQFEDAEDICGVVASVRQWQDKLSLWTKTAANEAAQMSIGRKWKEIIDVNDKITYNFHDDSRSKGATKGRYTV*

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