Glyma10g27532 - SoyBase

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Report for Sequence Feature Glyma10g27532

Feature Type:	gene_model
Chromosome:	Gm10
Start:	36224088
stop:	36225170
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27532

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15390	AT	Annotation by Michelle Graham. TAIR10: peptide deformylase 1A \| chr1:5294653-5295625 FORWARD LENGTH=269	SoyBase	E_val: 1.00E-53	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0043686	GO-bp	Annotation by Michelle Graham. GO Biological Process: co-translational protein modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0042586	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptide deformylase activity	SoyBase	N/A	ISS
PTHR10458	Panther	POLYPEPTIDE DEFORMYLASE	JGI		ISS
PF01327	PFAM	Polypeptide deformylase	JGI		ISS
UniRef100_B9RV35	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polypeptide deformylase, putative n=1 Tax=Ricinus communis RepID=B9RV35_RICCO	SoyBase	E_val: 2.00E-61	ISS
UniRef100_UPI000233CC20	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CC20 related cluster n=1 Tax=unknown RepID=UPI000233CC20	SoyBase	E_val: 2.00E-89	ISS

Expression Patterns of Glyma10g27532

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g27532 not represented in the dataset	Glyma10g27532 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27532 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g136000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27532

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g27532

Limit To All Plant Sequences

>Glyma10g27532.2   sequence type=transcript   gene model=Glyma10g27532   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTTTCAAACTTGCAGTGCTAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAAACAACAAGAAGACCAATTTACCTGATACCGTCAAAGTCGGTGACCCCGTTCTGCATGAGCCAGCCCAGGATGTTGATCCTATCGAAATAAAGTTGGAGAGAGTGCAGAAGATCATTGATGACATGATCCAGGTCATGAGAAAGGCTTCTGGTGTTGGTCTTGCTGCTCCCCAGATTGGAATTCCTTTGAGGATAATTGTTTTGGAAGATACAAAAGAGTACATTAGTTATGTCTCAAAGGAAGAGGCTAAAACTCAAGATAGAAGACCTGCTGATCTTTTGTTCTCTTGAGGCAGGTGATCCTGAATCCCAAGCTAGACAAGAAGGGCAAGAGGATTGCTCTGTTTTTTGAAGGATGCTTGAGGTGTCCTTCTTTGTTACCACTCTTTGCTTTGTCAGAGTATCAATTCATTTTTTGTGCCGTTATAATTCATTTTTTGAGTTGA

Coding sequences of Glyma10g27532

Limit To All Plant Sequences

>Glyma10g27532.1   sequence type=CDS   gene model=Glyma10g27532   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTTTCAAACTTGCAGTGCTAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAAACAACAAGAAGACCAATTTACCTGATACCGTCAAAGTCGGTGACCCCGTTCTGCATGAGCCAGCCCAGGATGTTGATCCTATCGAAATAAAGTTGGAGAGAGTGCAGAAGATCATTGATGACATGATCCAGGTCATGAGAAAGGCTTCTGGTGTTGGTCTTGCTGCTCCCCAGATTGGAATTCCTTTGAGGATAATTGTTTTGGAAGATACAAAAGAGTACATTAGTTATGTCTCAAAGGAAGAGGCTAAAACTCAAGATAGAAGACCTGCTGATCTTTTGGTGATCCTGAATCCCAAGCTAGACAAGAAGGGCAAGAGGATTGCTCTGTTTTTTGAAGGATGCTTGAGGTGTCCTTCTTTGTTACCACTCTTTGCTTTGTCAGAGTATCAATTCATTTTTTGTGCCGTTATAATTCATTTTTTGAGTTGA

>Glyma10g27532.2   sequence type=CDS   gene model=Glyma10g27532   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTTTCAAACTTGCAGTGCTAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAAACAACAAGAAGACCAATTTACCTGATACCGTCAAAGTCGGTGACCCCGTTCTGCATGAGCCAGCCCAGGATGTTGATCCTATCGAAATAAAGTTGGAGAGAGTGCAGAAGATCATTGATGACATGATCCAGGTCATGAGAAAGGCTTCTGGTGTTGGTCTTGCTGCTCCCCAGATTGGAATTCCTTTGAGGATAATTGTTTTGGAAGATACAAAAGAGTACATTAGTTATGTCTCAAAGGAAGAGGCTAAAACTCAAGATAGAAGACCTGCTGATCTTTTGTTCTCTTGA

Predicted protein sequences of Glyma10g27532

Limit To All Plant Sequences

>Glyma10g27532.1   sequence type=predicted peptide   gene model=Glyma10g27532   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SFQTCSARAGWFLGLGANNKKTNLPDTVKVGDPVLHEPAQDVDPIEIKLERVQKIIDDMIQVMRKASGVGLAAPQIGIPLRIIVLEDTKEYISYVSKEEAKTQDRRPADLLVILNPKLDKKGKRIALFFEGCLRCPSLLPLFALSEYQFIFCAVIIHFLS*

>Glyma10g27532.2   sequence type=predicted peptide   gene model=Glyma10g27532   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SFQTCSARAGWFLGLGANNKKTNLPDTVKVGDPVLHEPAQDVDPIEIKLERVQKIIDDMIQVMRKASGVGLAAPQIGIPLRIIVLEDTKEYISYVSKEEAKTQDRRPADLLFS*

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