Glyma10g27494 - SoyBase

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Report for Sequence Feature Glyma10g27494

Feature Type:	gene_model
Chromosome:	Gm10
Start:	36106513
stop:	36107764
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27494

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61250	AT	Annotation by Michelle Graham. TAIR10: glucuronidase 1 \| chr5:24632294-24634597 REVERSE LENGTH=539	SoyBase	E_val: 2.00E-45	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004566	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-glucuronidase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PTHR14363	Panther	HEPARANASE-RELATED	JGI		ISS
PTHR14363:SF7	Panther	HEPARANASE-RELATED	JGI		ISS
PF03662	PFAM	Glycosyl hydrolase family 79, N-terminal domain	JGI		ISS
UniRef100_B9RLS7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heparanase-2, putative n=1 Tax=Ricinus communis RepID=B9RLS7_RICCO	SoyBase	E_val: 8.00E-48	ISS
UniRef100_UPI000233CC1E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CC1E related cluster n=1 Tax=unknown RepID=UPI000233CC1E	SoyBase	E_val: 5.00E-86	ISS

Expression Patterns of Glyma10g27494

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g27494 not represented in the dataset	Glyma10g27494 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27494 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g135800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27494

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g27494

Limit To All Plant Sequences

>Glyma10g27494.1   sequence type=CDS   gene model=Glyma10g27494   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAAGTGTTGGTGTTGCACAATATGGGAAAGACTTGATAAAGCTTATTCTAAGCACGTTATACGAGAGCTCCAAGTTCAAGCCTTCACTTGTCGCACCTGGAGGATTTTATGAAAAATATTGGTATGACAGGCTTCTTCAGGTTTCGGGTTTAGGCATAATCAATGTTCTGACTCATCATTTATATAATTTGGGCCCAGGTAGTGATGAGCATCTTGAAAGGAAGATTCTAGATCATGAGCGCTTGAGTAGGGTGGAATCAATTTTCGGAAATCTTTCAGAAATCATTAAAATATATGGTCCTTGGTCTTCTGCATGGGTAGGAGAAGCTGGAGGGGCATACAACAGTGGTGTCAATCATGTTTCTAACAGATTTCTAAACAGCTTTTGTGCACTTTTGTGGCATCGGTTAATGGGAAAGAAGGTTCTTGCGGTCTCAAGTGATGTTCATATTAAAGACTTTTACCTACAGTTAGGAAATGTAAGTAGAAGTTAA

Predicted protein sequences of Glyma10g27494

Limit To All Plant Sequences

>Glyma10g27494.1   sequence type=predicted peptide   gene model=Glyma10g27494   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASVGVAQYGKDLIKLILSTLYESSKFKPSLVAPGGFYEKYWYDRLLQVSGLGIINVLTHHLYNLGPGSDEHLERKILDHERLSRVESIFGNLSEIIKIYGPWSSAWVGEAGGAYNSGVNHVSNRFLNSFCALLWHRLMGKKVLAVSSDVHIKDFYLQLGNVSRS*

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