Glyma10g27420 - SoyBase

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Report for Sequence Feature Glyma10g27420

Feature Type:	gene_model
Chromosome:	Gm10
Start:	36080425
stop:	36083138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10400	AT	Annotation by Michelle Graham. TAIR10: F-box/RNI-like/FBD-like domains-containing protein \| chr4:6446335-6447715 REVERSE LENGTH=409	SoyBase	E_val: 1.00E-14	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7JDH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7JDH5_MEDTR	SoyBase	E_val: 3.00E-63	ISS
UniRef100_I1LAR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAR3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g27420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g135600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g27420

Limit To All Plant Sequences

>Glyma10g27420.2   sequence type=CDS   gene model=Glyma10g27420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGGAAAAGAAACTAAGGGGAAGTTGACAACAGAGCCGATGATACAGAGGACAACTGAAGAAGAGAGGGATAGGCTGAGTGAGTTACCTGATTTTGTTCTGCTCCATATAATGAATTTTATTGACACAAAAGATGCACTTAGAACTTGTATCTTGTCCAAACGATGGAAGGACCTCTGGAAACATCTTACCACTCTCTCTTTCGATCAATCTACTAGCTTGTTTGATGAAAGAAGGGTTGTCAATTTTAACAAGTTTGTATCTCAGGTTCTATCTTGTCGGGATGGTTCCATTTTACTTATTAACATTCGTTTAGTCATCTTTGAATCAATAGGGTCTCAACTGCTGAATAGGATCATGAAATATGCTGTGTTGCACAATGTCCAACGGTTGACTATGAATATTCCTTTCTTTTATGGAAAAATATCCACTTATCTTGACCCTATCATTTTTTCCTGTCAGTCTTTGACATATCTTGAGCTTCACAATATATCTTGTTGGCCTCCTTTGGAACTTCCAAAATCCCTGCAGTTGCCAGCATTGAAAACCTTACGTCTCACCCGTGTCCTTTTTACTGCAACTAACAATGTCTGTGCTGAGCCCTTTACAACCTGCAACTTGTTGAATACTTTGGTCCTTAATGATTTCTTTTTGCACAATGATGCAAAAATACTCTTCATATCTAATTCTAACCTTTCCATTGTGCTTTCTACTCCAAATCTTAGTTCTCTCACAGTCTGTATTTTTGGGGCTTCAAGTTTGAGTATTCAACCACTCTCCTCTACATGTAATCTTTCATGTCTTGAAGAAGGAACTATTGACATCGCTACTGATATATCTCATCCAGTTCTCATAGGCTGGCTGCAAGTTTTCACTAATGTAAAGATATTGACACTTTCATATGAGACGCTTAAGCTAATACTAAAAGATCTATCAAATCTTGCTACAATGGGAAGTCAACCTCCGTGCTTTGTTAAATTGGAATCATTGAAAGTTGTAACATATCTATTCAGAGTGATATCTGATGAAGAAGTAAACAAGGCAGTGGAGTACCTACTTCAAAACTCTCCACTAATCAGAGTTTTGTTATCGAAAAAGTTGTATCATGGTTCTTTACTTAACTATTTAGGACCCGTCCTTGCTGGTCTTGCCAATCACAATAGAAGCCAAATTGGACCAAGCTTGGAGTGGGATCACAATCATCAACACCATAAGGGAGGCCTATGA

Predicted protein sequences of Glyma10g27420

Limit To All Plant Sequences

>Glyma10g27420.2   sequence type=predicted peptide   gene model=Glyma10g27420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGKETKGKLTTEPMIQRTTEEERDRLSELPDFVLLHIMNFIDTKDALRTCILSKRWKDLWKHLTTLSFDQSTSLFDERRVVNFNKFVSQVLSCRDGSILLINIRLVIFESIGSQLLNRIMKYAVLHNVQRLTMNIPFFYGKISTYLDPIIFSCQSLTYLELHNISCWPPLELPKSLQLPALKTLRLTRVLFTATNNVCAEPFTTCNLLNTLVLNDFFLHNDAKILFISNSNLSIVLSTPNLSSLTVCIFGASSLSIQPLSSTCNLSCLEEGTIDIATDISHPVLIGWLQVFTNVKILTLSYETLKLILKDLSNLATMGSQPPCFVKLESLKVVTYLFRVISDEEVNKAVEYLLQNSPLIRVLLSKKLYHGSLLNYLGPVLAGLANHNRSQIGPSLEWDHNHQHHKGGL*

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