Report for Sequence Feature Glyma10g27200
Feature Type: gene_model
Chromosome: Gm10
Start: 35912674
stop: 35915664
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g27200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G80470 AT
Annotation by Michelle Graham. TAIR10: F-box/RNI-like/FBD-like domains-containing protein | chr1:30256185-30257916 FORWARD LENGTH=481
SoyBase E_val: 4.00E-11 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_A2Q620 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-like F-box; Agenet n=1 Tax=Medicago truncatula RepID=A2Q620_MEDTR
SoyBase E_val: 6.00E-60 ISS
UniRef100_I1LAR3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAR3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g27200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma10g27200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g135500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g27200
Coding sequences of Glyma10g27200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g27200.1 sequence type=CDS gene model=Glyma10g27200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATTTTATTTACACAAAAGATGCACTTAGAACTTGTATCTTGTCCAAACGATGGAAGGACCTCTGGAAACATCTTACCACTCTCTCTTTCTATCAATCTAGCTTGTTTAATGAAAGAAGGGTTGTCAATTTTAACAAGTTTGTATCTCAGGTTCTGTCTTGTCGGGATGGTTCCATTTCACTTATTAACGTTCGTTTAGACATCTTTGAATCAATAGGGTCTCAACTGCTGAATAGGATCATGAAATATGCTGTGTTGCACAATGTCCAACAGTTGACTATGTATATTCCTTTCTATTATGGAAAAATATCCACTTATCTTGACCCTATCATTTTTTCCTGTCAGTCTTTGACATATCTTGAGCTTCACAATATATCTTGTTGGCCTCCTTTGGAACTTCCAAAATCCCTGCAGTTGCCAGCATTGAAAACCTTACGTCTCTCCCGTGTCCTTTTTACTGCAACTGACAATGTCTGTGCTGAGCCCTTTACAACCTGCAACTTGTTGAATACTTTGGTCCTTAATGATTGCTTTTTGCACAATGATGCAAAAATACTCTTCATATCTAATTCTAACCTTTCCAGTTTGAAGCTGAACAACCTGAAGATACGGGACACCTTTCAACACAAAGTTGTGCTTTCTACTCCAAATCTTAGTTCTCTCACAGTCTGTATTTTTGGGGCTTCAAGTTTGAGTATTCAACCACTCTCCTCTACATGTAATCTTTCATGTCTTGAAGAAGGAACTATTGACATCGCTACTGATATATCTCATCCAGTTCTCATAGGCTGGCTGCAAGTTTTCACTAATGTAAAGATATTGACACTTTCATATGAGACGCTTAAGCTAATATTAAAAGATCTATCAAATCTTGCTACAATGGGAAGTCAACCTCTGTGCTTTGTTAGATTGGAATCATTGAAATTTGTAACAAATCGATTCAGAGTGATATCTGATGAAGAAGTAAACAAGGCAGTGGAGTACCTACTTCAAAACTCTCCACTAATCAGAGTTTTGTTGTCGAAAAAGTTGTATCATGGTTCTTTACTTAACTATTTAGGACCCGTCCTTGCTGGTCTTGCCAATCACAATAGAAGCCAAATTGGACCAAGCTTGGAGTGGGATCACAATCATCAACACCATAAGGGAGGCCTATGA
Predicted protein sequences of Glyma10g27200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g27200.1 sequence type=predicted peptide gene model=Glyma10g27200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNFIYTKDALRTCILSKRWKDLWKHLTTLSFYQSSLFNERRVVNFNKFVSQVLSCRDGSISLINVRLDIFESIGSQLLNRIMKYAVLHNVQQLTMYIPFYYGKISTYLDPIIFSCQSLTYLELHNISCWPPLELPKSLQLPALKTLRLSRVLFTATDNVCAEPFTTCNLLNTLVLNDCFLHNDAKILFISNSNLSSLKLNNLKIRDTFQHKVVLSTPNLSSLTVCIFGASSLSIQPLSSTCNLSCLEEGTIDIATDISHPVLIGWLQVFTNVKILTLSYETLKLILKDLSNLATMGSQPLCFVRLESLKFVTNRFRVISDEEVNKAVEYLLQNSPLIRVLLSKKLYHGSLLNYLGPVLAGLANHNRSQIGPSLEWDHNHQHHKGGL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
