Glyma10g27001 - SoyBase

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Report for Sequence Feature Glyma10g27001

Feature Type:	gene_model
Chromosome:	Gm10
Start:	35534159
stop:	35540000
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27001

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1NEN8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NEN8_SOYBN	SoyBase	E_val: 4.00E-95	ISS

Expression Patterns of Glyma10g27001

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g27001 not represented in the dataset	Glyma10g27001 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27001 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g134500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27001

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g27001

Limit To All Plant Sequences

>Glyma10g27001.2   sequence type=transcript   gene model=Glyma10g27001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCAGCCCCTTTTTCCACCTCCATCCACTCTTTTTCCCAATTGAATTCATTAGGACTCCTCATTCAATTTTGAAGAGTGTTGGTGTGTGAGAATCAACACTACTTCTCTTCAGCTGGTTGCTGGTTTCTGTGCTTTTGATTGAGGATGCTGATATTATCATGCTTAGTTTCTAGTTGAAAGAAGATTACTGTGAAAAAGTGTTCCTGTCATCAAGGCAGTAGTTTGATAGAGGAAGAAGTTAGAAGATGGAAAATACACAATGTTGGGTTCGAAAAAGGGGTCAAAGGAAAAATGATTCATTATCCGAAGCATCTAAGTTAAAAAAGTTAGCTAAAAGGGGAATTTCTCACCAATGTTTGTAAACATTATCCAATCACAAAATAGTAATGTTTTCCCAGAGCATTTGTTCTTCCTACTTGTTCATGGACACTACAAGATTCCAAAGCTTATGGCAAGTGCAGATGAGATGTATCTTCGTTGCTGCCTCGAATCTGTACACAATAGTGCATTGAAAGCTTCCCAACACAACAAACCTGTGAGCTTGAATACAGTTAAATTTGTTGGTGAAGCAGAATGTGATTCTGGTCAGTTAGTCTTGGGACATTCTGTAGCTGTAAGTAATAATGCTTCTGATAATTGGACTCTAGGCACAGTAATGGGGACTAAGAGTATGATAAATATATTGAATAGTCCTTTGCTTCAGCACTTTGGTGCTTCAGAAGGAAATGATAATTTGAACAGCATGAACTTCACTGATGCTAAAAACATGACATGCTATGATTTTAAGGACTCTCCTAGTTCATCATATAAACTAGAAATGGAAACACCAATGGTGCAAAGTCATGAGTATGGTTCCATTTCTGTTCATAAAAGAACTACTTCCAAGACTAACTCTACTTGTCTGGATTGGTTGTCTTCTGCTGCTTCTACTGTGTCTCAAGGAATGCTCCAGTGAACTTGGAAGCAAGGTGTTCCTCATTTTGTTTTTTCTGCAGATGATCAGAAGGAGGTCTATGTAGCCAAATTGAGCAAGGTAGACACAACACATGATGAGGATTTGGACTATGTGTACCTATTTCACTTGAACAAGGGCTGCGAGATTCCTGACCGTGATTTGCAACTTGTTGGTCGTTTGATGAGAATCCCAAAGCTTCCCAAATATAGGGACCTATGACATGGGGTAGGACCAAACAGTCAAAAGATACCCTCCAAAAAATGGTAGTAGCTATAATTGACAAGGCTCAAGTGGAGAAGGACGAAGGCTCAGAGGCACTCTCAAGAATTTTGATTGTTGTAGGTCCAACCTAATTTCAAGGCCCATATCCAATATTTTTTATTTTTGTAATTGTAATTAAATAAATTGGTGGTTGAATCCTATGCCTTTTTAGTTGCACCAATTTTAGTTAATGCTACACTATATGTATTCAAC

Coding sequences of Glyma10g27001

Limit To All Plant Sequences

>Glyma10g27001.1   sequence type=CDS   gene model=Glyma10g27001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTAAACATTATCCAATCACAAAATAGTAATGTTTTCCCAGAGCATTTGTTCTTCCTACTTGTTCATGGACACTACAAGATTCCAAAGCTTATGGCAAGTGCAGATGAGATGTATCTTCGTTGCTGCCTCGAATCTGTACACAATAGTGCATTGAAAGCTTCCCAACACAACAAACCTGTGAGCTTGAATACAGTTAAATTTGTTGGTGAAGCAGAATGTGATTCTGGTCAGTTAGTCTTGGGACATTCTGTAGCTGTAAGTAATAATGCTTCTGATAATTGGACTCTAGGCACAGTAATGGGGACTAAGAGTATGATAAATATATTGAATAGTCCTTTGCTTCAGCACTTTGGTGCTTCAGAAGGAAATGATAATTTGAACAGCATGAACTTCACTGATGCTAAAAACATGACATGCTATGATTTTAAGGACTCTCCTAGTTCATCATATAAACTAGAAATGGAAACACCAATGGTGCAAAGTCATGAGTATGGTTCCATTTCTGTTCATAAAAGAACTACTTCCAAGACTAACTCTACTTGTCTGGATTGGTTGTCTTCTGCTGCTTCTACTGTGTCTCAAGGAATGCTCCAGTGA

>Glyma10g27001.2   sequence type=CDS   gene model=Glyma10g27001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTAAACATTATCCAATCACAAAATAGTAATGTTTTCCCAGAGCATTTGTTCTTCCTACTTGTTCATGGACACTACAAGATTCCAAAGCTTATGGCAAGTGCAGATGAGATGTATCTTCGTTGCTGCCTCGAATCTGTACACAATAGTGCATTGAAAGCTTCCCAACACAACAAACCTGTGAGCTTGAATACAGTTAAATTTGTTGGTGAAGCAGAATGTGATTCTGGTCAGTTAGTCTTGGGACATTCTGTAGCTGTAAGTAATAATGCTTCTGATAATTGGACTCTAGGCACAGTAATGGGGACTAAGAGTATGATAAATATATTGAATAGTCCTTTGCTTCAGCACTTTGGTGCTTCAGAAGGAAATGATAATTTGAACAGCATGAACTTCACTGATGCTAAAAACATGACATGCTATGATTTTAAGGACTCTCCTAGTTCATCATATAAACTAGAAATGGAAACACCAATGGTGCAAAGTCATGAGTATGGTTCCATTTCTGTTCATAAAAGAACTACTTCCAAGACTAACTCTACTTGTCTGGATTGGTTGTCTTCTGCTGCTTCTACTGTGTCTCAAGGAATGCTCCAGTGA

Predicted protein sequences of Glyma10g27001

Limit To All Plant Sequences

>Glyma10g27001.1   sequence type=predicted peptide   gene model=Glyma10g27001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVNIIQSQNSNVFPEHLFFLLVHGHYKIPKLMASADEMYLRCCLESVHNSALKASQHNKPVSLNTVKFVGEAECDSGQLVLGHSVAVSNNASDNWTLGTVMGTKSMINILNSPLLQHFGASEGNDNLNSMNFTDAKNMTCYDFKDSPSSSYKLEMETPMVQSHEYGSISVHKRTTSKTNSTCLDWLSSAASTVSQGMLQ*

>Glyma10g27001.2   sequence type=predicted peptide   gene model=Glyma10g27001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVNIIQSQNSNVFPEHLFFLLVHGHYKIPKLMASADEMYLRCCLESVHNSALKASQHNKPVSLNTVKFVGEAECDSGQLVLGHSVAVSNNASDNWTLGTVMGTKSMINILNSPLLQHFGASEGNDNLNSMNFTDAKNMTCYDFKDSPSSSYKLEMETPMVQSHEYGSISVHKRTTSKTNSTCLDWLSSAASTVSQGMLQ*

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