Glyma10g26990 - SoyBase

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Report for Sequence Feature Glyma10g26990

Feature Type:	gene_model
Chromosome:	Gm10
Start:	35502576
stop:	35507507
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g26990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04500	AT	Annotation by Michelle Graham. TAIR10: CCT motif family protein \| chr1:1221757-1224235 REVERSE LENGTH=386	SoyBase	E_val: 2.00E-110	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_B0F827	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger-like protein n=1 Tax=Cucumis sativus RepID=B0F827_CUCSA	SoyBase	E_val: 2.00E-127	ISS
UniRef100_UPI000233CAA5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CAA5 related cluster n=1 Tax=unknown RepID=UPI000233CAA5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g26990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g26990

Paralog	Evidence	Comments
Glyma20g21376	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g26990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g134400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g26990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g26990

Limit To All Plant Sequences

>Glyma10g26990.2   sequence type=transcript   gene model=Glyma10g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCATCATCTTATAGCTAACACAACACAACTTCTCTCTTTTTCTCTCTCTTCCTACCACTTTAATTTCGTTTCATGTCACCTTCTTGTTTTCTTTTTTAGAAAAATTAATCCCTTTAAGGCTTAATTTTCTAATTAAGCATGCAATATTGTTTTTAATTAGTCACCTTCAAGTCGAGGAACATACATATACACATATGTTTGTGATCACCACACCAAATTCCACTTCTTTCTAAGTGTGTGTATGTGTGTACATAGATTTTGTTTTATATATATTTGAGGTTTCACCTTCATTATTGCCTCCTTAATTCTGTGCAAAAGAGGATTCACCACCACCATGTTGCAGGATGTTATCCACCCCTCAACACCGGCTGAGCAACTCCCCATTGATGAGATTTCAAGCCCGATTAGTGCTCGAATTTTCGAACTTTGCGAGCCTGATTTCTTCCCAGACACACTGCAAAATTCAGATGTTACTTCCAGCTCAAATTGTTGCCATGAAGAGAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATTTAGTAGACAACAAGATCAATATCAATAACAATAGCAACATAGTCACTACTACCTCATCTAGCACTACCACAACCAGCACCACAACCAACAACAACAACAACAACACAACGAACAGCAATAACCTGTCCATCCTCTTTGACACTCAAGATGAAATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCATGTCGATCTTTAGTTGTTCCACCACTTCTCTCAATCTCAACTCAGCAGGATCAGTTTGATTTCTCTTCAGCTCAGCCACAGGTGCAACTATCAGCAGCAGCAGGTTCAGTTTTGAAGGGCCTCTCTCACTACCCTACAGATCATGTGATTGCACCCCTTATTGGATCTCCGTTACCATCTGTTTTTGATGAAGATTGCATATCTTCCATCCCTTCTTATGTGCCTCTCAACCCATCATCACCCTCTTGCTCTTATCTCAGTCCTGGCATAGGAGTGTACATGCCTCCTCCTGGTTCCCTTAACACTGCCTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTGGGGTCTGAACTGCAGGCACATGAATTGGACTATCAGGGAGAAAATGGTGGAATATTTTGCACAGATTCAATTCAGAGGGTGTTTAACCCCCCAGATCTTCAGGCACTTGGTACTGAGACTCAGAAACTTGTAGCTGGGGCTGGAAGTTCTGCCACTTTGACACCAGAAATCTCACACTTGGAGGACTCTAACTTGAAAGTTGGAAAACTCTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTAGCAGATAGCCGGCCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGAGTTTGGAGAGAGCCATAGACAAGGAAGTAGCAATCATGAAGAAGATGATGAAGAAATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCTTGATTTGAATTAAAATTAACTATTAGTTTGACTAGTGAAAGCTTATCTATATAATCAGCTTCTGTAGATTAATTTTGGCAGGGCCCTTTTCCCATCCCGGTTCTCTACAAATCCGGGTTTAGTGGCTTGAGGAAACTGAATAATTGAGGTCCAAATAATTATACCAATAAGTGAAGTGAGTTAGGAACGTACAGAAATTAGAAACTGTGTACATTTTTGCAGATATATATTATCTTTTTCATTAAGTTGTAATCGAACATGGAGTTGCGTTAACTAAGGAAAATTCCAGTTGCCCCCTCCCAAGATTGATGTAGCTTCTTTTTATAAATATTTAGGAACTTGCTTTTAAGTAGCTTTACATGCTCTAATTATTCTTTCTACTTAAATATGATTGATAAATATTGAAGCTGAGA

Coding sequences of Glyma10g26990

Limit To All Plant Sequences

>Glyma10g26990.1   sequence type=CDS   gene model=Glyma10g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAACATGTTGCTCACAATGCTTATATGTCACCACTCACTGCAGGATGAGATTTCAAGCCCGATTAGTGCTCGAATTTTCGAACTTTGCGAGCCTGATTTCTTCCCAGACACACTGCAAAATTCAGATGTTACTTCCAGCTCAAATTGTTGCCATGAAGAGAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATTTAGTAGACAACAAGATCAATATCAATAACAATAGCAACATAGTCACTACTACCTCATCTAGCACTACCACAACCAGCACCACAACCAACAACAACAACAACAACACAACGAACAGCAATAACCTGTCCATCCTCTTTGACACTCAAGATGAAATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCATGTCGATCTTTAGTTGTTCCACCACTTCTCTCAATCTCAACTCAGCAGGATCAGTTTGATTTCTCTTCAGCTCAGCCACAGGTGCAACTATCAGCAGCAGCAGGTTCAGTTTTGAAGGGCCTCTCTCACTACCCTACAGATCATGTGATTGCACCCCTTATTGGATCTCCGTTACCATCTGTTTTTGATGAAGATTGCATATCTTCCATCCCTTCTTATGTGCCTCTCAACCCATCATCACCCTCTTGCTCTTATCTCAGTCCTGGCATAGGAGTGTACATGCCTCCTCCTGGTTCCCTTAACACTGCCTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTGGGGTCTGAACTGCAGGCACATGAATTGGACTATCAGGGAGAAAATGGTGGAATATTTTGCACAGATTCAATTCAGAGGGTGTTTAACCCCCCAGATCTTCAGGCACTTGGTACTGAGACTCAGAAACTTGTAGCTGGGGCTGGAAGTTCTGCCACTTTGACACCAGAAATCTCACACTTGGAGGACTCTAACTTGAAAGTTGGAAAACTCTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTAGCAGATAGCCGGCCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGAGTTTGGAGAGAGCCATAGACAAGGAAGTAGCAATCATGAAGAAGATGATGAAGAAATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCTTGATTTGA

>Glyma10g26990.2   sequence type=CDS   gene model=Glyma10g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGGATGTTATCCACCCCTCAACACCGGCTGAGCAACTCCCCATTGATGAGATTTCAAGCCCGATTAGTGCTCGAATTTTCGAACTTTGCGAGCCTGATTTCTTCCCAGACACACTGCAAAATTCAGATGTTACTTCCAGCTCAAATTGTTGCCATGAAGAGAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATTTAGTAGACAACAAGATCAATATCAATAACAATAGCAACATAGTCACTACTACCTCATCTAGCACTACCACAACCAGCACCACAACCAACAACAACAACAACAACACAACGAACAGCAATAACCTGTCCATCCTCTTTGACACTCAAGATGAAATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCATGTCGATCTTTAGTTGTTCCACCACTTCTCTCAATCTCAACTCAGCAGGATCAGTTTGATTTCTCTTCAGCTCAGCCACAGGTGCAACTATCAGCAGCAGCAGGTTCAGTTTTGAAGGGCCTCTCTCACTACCCTACAGATCATGTGATTGCACCCCTTATTGGATCTCCGTTACCATCTGTTTTTGATGAAGATTGCATATCTTCCATCCCTTCTTATGTGCCTCTCAACCCATCATCACCCTCTTGCTCTTATCTCAGTCCTGGCATAGGAGTGTACATGCCTCCTCCTGGTTCCCTTAACACTGCCTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTGGGGTCTGAACTGCAGGCACATGAATTGGACTATCAGGGAGAAAATGGTGGAATATTTTGCACAGATTCAATTCAGAGGGTGTTTAACCCCCCAGATCTTCAGGCACTTGGTACTGAGACTCAGAAACTTGTAGCTGGGGCTGGAAGTTCTGCCACTTTGACACCAGAAATCTCACACTTGGAGGACTCTAACTTGAAAGTTGGAAAACTCTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTAGCAGATAGCCGGCCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGAGTTTGGAGAGAGCCATAGACAAGGAAGTAGCAATCATGAAGAAGATGATGAAGAAATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCTTGATTTGA

Predicted protein sequences of Glyma10g26990

Limit To All Plant Sequences

>Glyma10g26990.1   sequence type=predicted peptide   gene model=Glyma10g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNMLLTMLICHHSLQDEISSPISARIFELCEPDFFPDTLQNSDVTSSSNCCHEEKSSYATTISPPLDLVDNKININNNSNIVTTTSSSTTTTSTTTNNNNNNTTNSNNLSILFDTQDEIDNDISASIDFSSCRSLVVPPLLSISTQQDQFDFSSAQPQVQLSAAAGSVLKGLSHYPTDHVIAPLIGSPLPSVFDEDCISSIPSYVPLNPSSPSCSYLSPGIGVYMPPPGSLNTALSADSSGLFGGNILLGSELQAHELDYQGENGGIFCTDSIQRVFNPPDLQALGTETQKLVAGAGSSATLTPEISHLEDSNLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGESHRQGSSNHEEDDEEIIVKEDDDMVDSSDIFAHISGVNSFKCNYSIQSLI*

>Glyma10g26990.2   sequence type=predicted peptide   gene model=Glyma10g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQDVIHPSTPAEQLPIDEISSPISARIFELCEPDFFPDTLQNSDVTSSSNCCHEEKSSYATTISPPLDLVDNKININNNSNIVTTTSSSTTTTSTTTNNNNNNTTNSNNLSILFDTQDEIDNDISASIDFSSCRSLVVPPLLSISTQQDQFDFSSAQPQVQLSAAAGSVLKGLSHYPTDHVIAPLIGSPLPSVFDEDCISSIPSYVPLNPSSPSCSYLSPGIGVYMPPPGSLNTALSADSSGLFGGNILLGSELQAHELDYQGENGGIFCTDSIQRVFNPPDLQALGTETQKLVAGAGSSATLTPEISHLEDSNLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGESHRQGSSNHEEDDEEIIVKEDDDMVDSSDIFAHISGVNSFKCNYSIQSLI*

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