SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40650 | AT | Annotation by Michelle Graham. TAIR10: succinate dehydrogenase 2-2 | chr5:16281462-16283296 FORWARD LENGTH=280 | SoyBase | E_val: 4.00E-52 | ISS |
| GO:0006099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle | SoyBase | N/A | ISS |
| GO:0006121 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, succinate to ubiquinone | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005749 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex II | SoyBase | N/A | ISS |
| GO:0045281 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: succinate dehydrogenase complex | SoyBase | N/A | ISS |
| GO:0000104 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: succinate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| GO:0051537 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding | SoyBase | N/A | ISS |
| PTHR11921 | Panther | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN | JGI | ISS | |
| PF01554 | PFAM | MatE | JGI | ISS | |
| UniRef100_I1LAQ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LAQ6_SOYBN | SoyBase | E_val: 7.00E-95 | ISS |
| UniRef100_Q198M7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Succinate dehydrogenase (Fragment) n=1 Tax=Mangifera indica RepID=Q198M7_MANIN | SoyBase | E_val: 3.00E-53 | ISS |
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Glyma10g26971 not represented in the dataset |
Glyma10g26971 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g26971.1 sequence type=CDS gene model=Glyma10g26971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTGTTACAAGTTCCTTTATCCAGATAAGGAGAACAAAATTATAGAGTCCATGAATGCTAAGTTTTTGGAGCTTGATGTGGCAGACCCTGTTGTTCCATCTGATGATATTGATGTCGAGTCACGTGTTTCATCTGTATTATTAGGAATATCAGATTCAGGTCCCTATCACCAAGATCCAACAACTTCTCAACCACAAGAAGTTGTTATTTCCTTTGATTCACGAACCCAAAAAATTAAAAAGGCCTACATGTCGGAGGTACAGGCCCAGCAGGTGGAGCCCAAGGCCCGTGAAAGCCCAACCCGCAAAATCCCAACCCTCAAAACCTTCCAAATCTATCGCTGGAACCCCAAAAACCCTTCAAAGCACAAGGTCAAGGACTACCAGATCAACCTAAAGGAGGGTGGGCCGATGGTCCTCGATGCGCTCAACAACATCCAGAATAAGATTGACCCGAGCCTCACGTTCCGCCGCTCATGCCGCGAGGGGATCTGCGGCTCCTGCGCAATGAACATCGACGACTACAACAACATTGCGTGCCTCACCAAGATCCCCTTGGAAAAAAACTCCGCCGCCATGACGATCACTCCTCTGCCACACATGTTCGTGATCAAGGACCTGGTTATGGACATGACGAACTTCTACACAAATTTAAGAGAAGTCCTCCATAAAATTAATCACTCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAACTATTTTTCATTTTTGAATACATGTTAAGTTTGATCGATCATACGCTTCTTTGCAGTCTTAACACAACCACATTGCACTACTTTATTCCTTATGTTGTGGGAGCCTTTGCAAGCACTCGGGTTTCAAATGAACTAGGGGCAGGGAATCCAAAGAGAGCAAAAGGTGTTGTACGTGTGGTAGTGATTCTCAAGGTGGCAGAGGCAGTTATTGTGAAACAGAATTACACTACAAATTGCTCAGCGTTATATTGGATAATGAATCTACTACAGGTCCCTATCACTATAGGAACAACTTTTTATGAAGTCGTGCTTCTATACAAAGGTCAGAGTGTGATAGCATCAAAGGGTGATCAACAAACACGTTGGCATGTACAACAATTGATTCTATATTGCATGTGTGGCATAATTTCTGGCATAATTGGTGGCTTGCTTGGCCTTGGTGGAGGATTCATCTTGGGGCCACTTTTCATTGGACTAGGAATTCATCCTCAGGGGAGGAGACGCCCAATAACACAAAGAGTCTCCCTATTGTAA
>Glyma10g26971.1 sequence type=predicted peptide gene model=Glyma10g26971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCYKFLYPDKENKIIESMNAKFLELDVADPVVPSDDIDVESRVSSVLLGISDSGPYHQDPTTSQPQEVVISFDSRTQKIKKAYMSEVQAQQVEPKARESPTRKIPTLKTFQIYRWNPKNPSKHKVKDYQINLKEGGPMVLDALNNIQNKIDPSLTFRRSCREGICGSCAMNIDDYNNIACLTKIPLEKNSAAMTITPLPHMFVIKDLVMDMTNFYTNLREVLHKINHSNIIKLKEVVRENNELFFIFEYMLSLIDHTLLCSLNTTTLHYFIPYVVGAFASTRVSNELGAGNPKRAKGVVRVVVILKVAEAVIVKQNYTTNCSALYWIMNLLQVPITIGTTFYEVVLLYKGQSVIASKGDQQTRWHVQQLILYCMCGIISGIIGGLLGLGGGFILGPLFIGLGIHPQGRRRPITQRVSLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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