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Report for Sequence Feature Glyma10g26870

Feature Type:gene_model
Chromosome:Gm10
Start:35331094
stop:35352227
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g26870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33340AT Annotation by Michelle Graham. TAIR10: MOS4-associated complex 3B | chr2:14126584-14131000 REVERSE LENGTH=525 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
KOG0289 KOG mRNA splicing factor JGI ISS
PTHR13889Panther WD40 REPEAT PROTEIN JGI ISS
PTHR13889:SF9Panther SNRNP - RELATED JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF08606PFAM Prp19/Pso4-like JGI ISS
UniRef100_G7I632UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-processing factor-like protein n=1 Tax=Medicago truncatula RepID=G7I632_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LAQ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAQ3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g26870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g26870
ParalogEvidenceComments
Glyma20g21330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g26870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g133700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g26870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g26870
>Glyma10g26870.1   sequence type=CDS   gene model=Glyma10g26870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGATCCCGTCGTGTCCCGGAACTCCGGTCTCCTCTTCGAGAAGCGTTTGATTGAGCGACACATCTCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGATGACATTGTACCAATCAAGACAGGCAAGATAGTGAAACCCAGACCTGTTCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAGGAGCTGAGTCATGCTCTGTATCAGCATGATGCCGCTTGCCGAGTTATTGCAAGACTAAAAAAGGAACGAGATGAAGCTAGGTCTGTACTTGCACAAGCAGAAAGGCAGTTCCCTGCTTCTGCACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAGCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCCGAGCTAACTGATTGCAATGCTTCTCTTTCCCAGCAGAGAAAGAAGCGACAGATTCCTGCAACTTTGGCTCCTGTTGAAGCTCTAGAGGCATATACCCAGATATCTAGTCACCCCTTTCACAAAACAAACAAACAAGGGATTATATCTCTTGATATCCTTTATTCTAAGGATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTAGCTACGCTCAGTGGTCACTCTAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCATTCTTAACTGCTTCAGCAGATAAGACAGTTCGACTATGGCAAGGGTCAGATGATGGTAACTACAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTACTTTGTGACTGCTTCACTTGACGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACATGTCTGACTCAGGTTTATGACACTTCAGGTTCTTCTGAAGGGTACACTTCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGATTTGGGACGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGTGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAGGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCCGGAACAGGGAAGAACACGTGTGTAAAATTTGGTTCAGATTCTAAATACATAGCAGTGGGATCAATGGACCGGAATCTTCGGATATTCGGCTTGCCTGGCGAAGATGCTCCTACTGAGTCATAA
Predicted protein sequences of Glyma10g26870
>Glyma10g26870.1   sequence type=predicted peptide   gene model=Glyma10g26870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCSISGEVPEDPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSVLAQAERQFPASAPNAITANDPVLSNGKRAAEDEDLAPGAKKIHPGISSSIISELTDCNASLSQQRKKRQIPATLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILATLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYDTSGSSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKNTCVKFGSDSKYIAVGSMDRNLRIFGLPGEDAPTES*






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