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Report for Sequence Feature Glyma10g26770

Feature Type:gene_model
Chromosome:Gm10
Start:35212010
stop:35215783
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g26770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05150AT Annotation by Michelle Graham. TAIR10: Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808 SoyBaseE_val: 0ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG0550 KOG Molecular chaperone (DnaJ superfamily) JGI ISS
PTHR23083Panther O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT JGI ISS
PTHR23083:SF9Panther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
UniRef100_G7I6P0UniRef Annotation by Michelle Graham. Most informative UniRef hit: TPR repeat-containing protein, putative n=1 Tax=Medicago truncatula RepID=G7I6P0_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233DA00UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DA00 related cluster n=1 Tax=unknown RepID=UPI000233DA00 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g26770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g26770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g132800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g26770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g26770
>Glyma10g26770.2   sequence type=CDS   gene model=Glyma10g26770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGAGGGGCACCAGATCGGAGAAGGTTCGGCGAATTTTCAACCAATTCGACGCGAACCGTGATGGGGGTCTCAACCGCGAGGAAATGGCGTCGCTGGTGGGTGCTGTGAACCCTAGGGTGAAATTCAGCGACGAACAAATCAACGCGATCCTTGATGAGGTGTTCCGAACATACGGCGAATTCATCGACGGCGACAAGGGTCTCACGTACGAGGGTTTGTTGCGCACGTACGACGACGGCGCCGGCGACGTCGACCGTGACTTCGACGCGCTCGGCCTCGACCTCGTCGCCGCTGACGCCGCGAAGGAGCCCCTCGCGGCGTTGGAGGCGTCGTCCTCGTCGATTGTCGACGAGAGGATGGCGGTGGAGACGCAGAAGAAGCAGCGGACGGCCGCCTGGGCCGTGTCGCCGAACCACGGGATCGTGTTCGACGAAACGTGGAAGATTGTGGACGATTTGGAGCTTCTTGTGAAGAGGCTGAAGGTGAAGCAGTCCAAGGAAGGTGGGAAATTGAAGAATGACAACTTTGACGCGTATTCGGATGCCGGCTGGTCGCGCGAATTGGGGCCTTCGGCGGAGATTTCGGAGAAGAGAGTGATGTGGGAGGAATCAGGGCATGATTATGCAGTGTTTTTGAAGGAATTGGGAGGGTTGAGAGGGAGGGCTGATGGTGCTAGGTCAAGAGAAGAGGCATTTGATGGGCACATGGCAATTGGGAGGGTTTTGTATGAGCACCAGTTGTTTAAGGAGGCATTGGTTAGTTTCAAGAGGGCTTGTGAGTTGCAGCCTGTGGATGTGAGGCCTCATTTTAGAACAGGGAACTGTTTGTATGTTCTTGGCAGGTACAAGGAGGCCAAGGAGGAGTTCCTCTTGGCTCTTGAGTCTGCTGAGGCTGGAGGGAACCAATGGGCTTACTTGCTACCCCAGATTTATGTCAACCTCGGCATCGCACTCGAGGGTGAAGGGCTGGTTTTGAGTGCCTGTGAGTATTATAGGGAGGCTGCGATTCTTTGTCCCACACATTTTAGAGCTTTGAAGCTCTTAGGTAGTGCTCTTTTTGGTGTTGGGGAGTATAGGGCCGCGGTGAAGGCATTGGAGGAGGCAATATTCATGAAGCCGGATTATGCTGATGCGCATTGTGATTTGGCCTCGGCGTTGCATGCCATGGGTGAGGATGAGAGGGCGATTGAGGTGTTTCAGAAGGCTATTGATTTGAAGCCTGGTCATGTTGATGCGCTTTATAATTTAGGTGGGTTGTACATGGACCTAGGTAGGTTTCAGAGGGCTTCTGAAATGTATACTAGGGTTTTGGCTGTGTGGCCAAACCATTGGCGAGCCCAGCTGAACAAGGCGGTGTCGCTGCTAGGAGCTGGGGAGACTGAAGAGGCCAAAAGAGCTTTGAAAGAAGCATTGAAAATGACGAATAGGGTTGAGCTGCATGATGCAATATCTCATTTGAAGCAGCTGCAGAAAAAGAAGACCAAACCTAGTAATGGGGGTGCTTCCGGGGAGGCATCCTTTGTTATTGTTGAACCATCTAAGTTTAAGGTAGTTGGAGATAAGACTACGGGGAGGCAGGAGCTAGCCACTGCCTTGCAAATCAGAGCGCTTCAGAGGGTTGCTCGGTTGAGTCGTTGCAGCGTGGAGCTTTTGAAGAAGGAGATGAGCGAACGTGATGTGCCGGTGTCCTATTCTGGTAGTGGAGTTCCTGAAAAGTCCATCCGGAAGCCGAGTTTGGAAGAAATTCTTCACAGATTACTCAATTTTCTGAAGCCTGAGACTTTTCAAGGGGCTGTAAAAGCCATAAATGAGAGGATTCTTTCTGTTTTGGATGAGAATGGTTCAGGCAGGCTGGATCTGGGAATGTTTTTTGCTATTCTTGCTCCTATTTGTGGCGGTCCTCCGGATAGACGCAAAAGGGTTGCCTTTGATGCACTTTTGTGGCGTCCTATGAACGAAGACGGTGCTAATATTAGGAAATTTGATGCCACTTTATACATCAAGTTGTTAAGGGCAGTTTATCTTCCTAGCCAAGGGGTTAGTGAATTAATGGAGGTTCGTGGAGATTCGGACACTTCAATGGTGTCTTTCTCTGAGTTTTTAGTTATGTTTGACGATCCAGATTGGGGTTTTGGCATCATGCCTACTCTGGTGAAGCTTGAAACCGGGGATAGAAACAGGCATGGTGACACGGTATGCTCGGTTTGCCGCTACCCAATTATTGGTTCTCGGTTTAAGGAGATAAAATCTCATTTTAGTTTGTGTAACCAATGCTACAGTGAGGGAAAGGTGCCTTCTTCATTTAAGCAGGATGAGTACAGATTTAAAGAGTATGGAAGTGAGGGTGAAGCCATGAAAGATAAGTGTATGTGCTTCAGTTTGCAATTCCATAATGAAAAGTAG
Predicted protein sequences of Glyma10g26770
>Glyma10g26770.2   sequence type=predicted peptide   gene model=Glyma10g26770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRGTRSEKVRRIFNQFDANRDGGLNREEMASLVGAVNPRVKFSDEQINAILDEVFRTYGEFIDGDKGLTYEGLLRTYDDGAGDVDRDFDALGLDLVAADAAKEPLAALEASSSSIVDERMAVETQKKQRTAAWAVSPNHGIVFDETWKIVDDLELLVKRLKVKQSKEGGKLKNDNFDAYSDAGWSRELGPSAEISEKRVMWEESGHDYAVFLKELGGLRGRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPVDVRPHFRTGNCLYVLGRYKEAKEEFLLALESAEAGGNQWAYLLPQIYVNLGIALEGEGLVLSACEYYREAAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFMKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKMTNRVELHDAISHLKQLQKKKTKPSNGGASGEASFVIVEPSKFKVVGDKTTGRQELATALQIRALQRVARLSRCSVELLKKEMSERDVPVSYSGSGVPEKSIRKPSLEEILHRLLNFLKPETFQGAVKAINERILSVLDENGSGRLDLGMFFAILAPICGGPPDRRKRVAFDALLWRPMNEDGANIRKFDATLYIKLLRAVYLPSQGVSELMEVRGDSDTSMVSFSEFLVMFDDPDWGFGIMPTLVKLETGDRNRHGDTVCSVCRYPIIGSRFKEIKSHFSLCNQCYSEGKVPSSFKQDEYRFKEYGSEGEAMKDKCMCFSLQFHNEK*






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