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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05150 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG0550 | KOG | Molecular chaperone (DnaJ superfamily) | JGI | ISS | |
| PTHR23083 | Panther | O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT | JGI | ISS | |
| PTHR23083:SF9 | Panther | TETRATRICOPEPTIDE REPEAT PROTEIN, TPR | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_G7I6P0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TPR repeat-containing protein, putative n=1 Tax=Medicago truncatula RepID=G7I6P0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DA00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA00 related cluster n=1 Tax=unknown RepID=UPI000233DA00 | SoyBase | E_val: 0 | ISS |
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Glyma10g26770 not represented in the dataset |
Glyma10g26770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g132800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g26770.2 sequence type=CDS gene model=Glyma10g26770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGAGGGGCACCAGATCGGAGAAGGTTCGGCGAATTTTCAACCAATTCGACGCGAACCGTGATGGGGGTCTCAACCGCGAGGAAATGGCGTCGCTGGTGGGTGCTGTGAACCCTAGGGTGAAATTCAGCGACGAACAAATCAACGCGATCCTTGATGAGGTGTTCCGAACATACGGCGAATTCATCGACGGCGACAAGGGTCTCACGTACGAGGGTTTGTTGCGCACGTACGACGACGGCGCCGGCGACGTCGACCGTGACTTCGACGCGCTCGGCCTCGACCTCGTCGCCGCTGACGCCGCGAAGGAGCCCCTCGCGGCGTTGGAGGCGTCGTCCTCGTCGATTGTCGACGAGAGGATGGCGGTGGAGACGCAGAAGAAGCAGCGGACGGCCGCCTGGGCCGTGTCGCCGAACCACGGGATCGTGTTCGACGAAACGTGGAAGATTGTGGACGATTTGGAGCTTCTTGTGAAGAGGCTGAAGGTGAAGCAGTCCAAGGAAGGTGGGAAATTGAAGAATGACAACTTTGACGCGTATTCGGATGCCGGCTGGTCGCGCGAATTGGGGCCTTCGGCGGAGATTTCGGAGAAGAGAGTGATGTGGGAGGAATCAGGGCATGATTATGCAGTGTTTTTGAAGGAATTGGGAGGGTTGAGAGGGAGGGCTGATGGTGCTAGGTCAAGAGAAGAGGCATTTGATGGGCACATGGCAATTGGGAGGGTTTTGTATGAGCACCAGTTGTTTAAGGAGGCATTGGTTAGTTTCAAGAGGGCTTGTGAGTTGCAGCCTGTGGATGTGAGGCCTCATTTTAGAACAGGGAACTGTTTGTATGTTCTTGGCAGGTACAAGGAGGCCAAGGAGGAGTTCCTCTTGGCTCTTGAGTCTGCTGAGGCTGGAGGGAACCAATGGGCTTACTTGCTACCCCAGATTTATGTCAACCTCGGCATCGCACTCGAGGGTGAAGGGCTGGTTTTGAGTGCCTGTGAGTATTATAGGGAGGCTGCGATTCTTTGTCCCACACATTTTAGAGCTTTGAAGCTCTTAGGTAGTGCTCTTTTTGGTGTTGGGGAGTATAGGGCCGCGGTGAAGGCATTGGAGGAGGCAATATTCATGAAGCCGGATTATGCTGATGCGCATTGTGATTTGGCCTCGGCGTTGCATGCCATGGGTGAGGATGAGAGGGCGATTGAGGTGTTTCAGAAGGCTATTGATTTGAAGCCTGGTCATGTTGATGCGCTTTATAATTTAGGTGGGTTGTACATGGACCTAGGTAGGTTTCAGAGGGCTTCTGAAATGTATACTAGGGTTTTGGCTGTGTGGCCAAACCATTGGCGAGCCCAGCTGAACAAGGCGGTGTCGCTGCTAGGAGCTGGGGAGACTGAAGAGGCCAAAAGAGCTTTGAAAGAAGCATTGAAAATGACGAATAGGGTTGAGCTGCATGATGCAATATCTCATTTGAAGCAGCTGCAGAAAAAGAAGACCAAACCTAGTAATGGGGGTGCTTCCGGGGAGGCATCCTTTGTTATTGTTGAACCATCTAAGTTTAAGGTAGTTGGAGATAAGACTACGGGGAGGCAGGAGCTAGCCACTGCCTTGCAAATCAGAGCGCTTCAGAGGGTTGCTCGGTTGAGTCGTTGCAGCGTGGAGCTTTTGAAGAAGGAGATGAGCGAACGTGATGTGCCGGTGTCCTATTCTGGTAGTGGAGTTCCTGAAAAGTCCATCCGGAAGCCGAGTTTGGAAGAAATTCTTCACAGATTACTCAATTTTCTGAAGCCTGAGACTTTTCAAGGGGCTGTAAAAGCCATAAATGAGAGGATTCTTTCTGTTTTGGATGAGAATGGTTCAGGCAGGCTGGATCTGGGAATGTTTTTTGCTATTCTTGCTCCTATTTGTGGCGGTCCTCCGGATAGACGCAAAAGGGTTGCCTTTGATGCACTTTTGTGGCGTCCTATGAACGAAGACGGTGCTAATATTAGGAAATTTGATGCCACTTTATACATCAAGTTGTTAAGGGCAGTTTATCTTCCTAGCCAAGGGGTTAGTGAATTAATGGAGGTTCGTGGAGATTCGGACACTTCAATGGTGTCTTTCTCTGAGTTTTTAGTTATGTTTGACGATCCAGATTGGGGTTTTGGCATCATGCCTACTCTGGTGAAGCTTGAAACCGGGGATAGAAACAGGCATGGTGACACGGTATGCTCGGTTTGCCGCTACCCAATTATTGGTTCTCGGTTTAAGGAGATAAAATCTCATTTTAGTTTGTGTAACCAATGCTACAGTGAGGGAAAGGTGCCTTCTTCATTTAAGCAGGATGAGTACAGATTTAAAGAGTATGGAAGTGAGGGTGAAGCCATGAAAGATAAGTGTATGTGCTTCAGTTTGCAATTCCATAATGAAAAGTAG
>Glyma10g26770.2 sequence type=predicted peptide gene model=Glyma10g26770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATRGTRSEKVRRIFNQFDANRDGGLNREEMASLVGAVNPRVKFSDEQINAILDEVFRTYGEFIDGDKGLTYEGLLRTYDDGAGDVDRDFDALGLDLVAADAAKEPLAALEASSSSIVDERMAVETQKKQRTAAWAVSPNHGIVFDETWKIVDDLELLVKRLKVKQSKEGGKLKNDNFDAYSDAGWSRELGPSAEISEKRVMWEESGHDYAVFLKELGGLRGRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPVDVRPHFRTGNCLYVLGRYKEAKEEFLLALESAEAGGNQWAYLLPQIYVNLGIALEGEGLVLSACEYYREAAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFMKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKMTNRVELHDAISHLKQLQKKKTKPSNGGASGEASFVIVEPSKFKVVGDKTTGRQELATALQIRALQRVARLSRCSVELLKKEMSERDVPVSYSGSGVPEKSIRKPSLEEILHRLLNFLKPETFQGAVKAINERILSVLDENGSGRLDLGMFFAILAPICGGPPDRRKRVAFDALLWRPMNEDGANIRKFDATLYIKLLRAVYLPSQGVSELMEVRGDSDTSMVSFSEFLVMFDDPDWGFGIMPTLVKLETGDRNRHGDTVCSVCRYPIIGSRFKEIKSHFSLCNQCYSEGKVPSSFKQDEYRFKEYGSEGEAMKDKCMCFSLQFHNEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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