SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13510 | AT | Annotation by Michelle Graham. TAIR10: ammonium transporter 1;1 | chr4:7858220-7859725 FORWARD LENGTH=501 | SoyBase | E_val: 0 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0006862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organic cation transport | SoyBase | N/A | ISS |
| GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
| GO:0015802 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basic amino acid transport | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ion transport | SoyBase | N/A | ISS |
| GO:0051258 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein polymerization | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0080181 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root branching | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ammonium transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0682 | KOG | Ammonia permease | JGI | ISS | |
| PTHR11730 | Panther | AMMONIUM TRANSPORTER | JGI | ISS | |
| PTHR11730:SF8 | Panther | AMMONIUM TRANSPORTER 1 | JGI | ISS | |
| PF00909 | PFAM | Ammonium Transporter Family | JGI | ISS | |
| UniRef100_E2CWJ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AMT1;1 ammonium/proton co-transporter n=1 Tax=Phaseolus vulgaris RepID=E2CWJ2_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001E7A3E6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001E7A3E6 related cluster n=1 Tax=unknown RepID=UPI0001E7A3E6 | SoyBase | E_val: 0 | ISS |
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Glyma10g26690 not represented in the dataset |
Glyma10g26690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g21030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g132300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g26690.1 sequence type=CDS gene model=Glyma10g26690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCTGCCTGCTTGTCCCGCCGAACAACTGGCCCAACTTCTCGGCCCAAACACCACAGACGCCTCCGCCGCCGCCTCCCTTATCTGCGGCCAGTTCGCCGCCGTGGACAGCAAGTTCGTCGACACGGCCTTCGCCGTCGACAACACCTACCTCCTCTTTTCCGCCTACCTCGTTTTTTCTATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTGGACGCTGCCGCCGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCCTTCGCTTTCGGCTCCCCCTCCAACGGCTTCATCGGTAAACATTTCTTCGGCCTCAAGGACATCCCTTCATCCTCCTACGACTACAGCTACTTCCTCTACCAATGGGCCTTCGCCATCGCCGCCGCCGGCATCACCAGCGGAAGCATCGCCGAACGCACACAGTTCGTGGCCTATCTCATCTACTCCTCCTTCCTCACCGGCTTCGTCTATCCGGTGGTCTCCCACTGGTTCTGGTCCCCAGACGGCTGGGCCTCTGCCTTTAAGATCACCGACCGGCTATTTTCCACCGGCGTAATAGACTTCGCCGGTTCCGGCGTAGTCCACATGGTCGGCGGAATAGCCGGCCTATGGGGAGCGCTGATCGAAGGCCCAAGAATGGGACGTTTCGATCATGCAGGACGAGCTGTGGCCTTGCGAGGCCACAGCGCGTCCTTAGTAGTCCTGGGAACCTTCTTGCTTTGGTTCGGTTGGTACGGATTTAACCCCGGTTCATTTAACAAAATCCTACTTACTTACGGTAACTCAGGAAATTACTACGGTCAATGGAGCGCGGTTGGCAGAACCGCGGTCACCACTACCCTAGCGGGGTCAACAGCTGCCTTGACCACGCTATTCGGTAAACGGGTGATATCCGGTCACTGGAACGTGACCGATGTCTGCAACGGGCTGTTAGGCGGTTTCGCGGCGATAACAGCCGGTTGCTCCGTGGTTGAGCCATGGGCAGCCATCGTATGCGGTTTTGTTGCTTCTATAGTATTAATAGCTTGCAACAAATTAGCAGAGAAGGTTAAGTTCGACGATCCTCTGGAGGCGGCGCAGTTGCACGGTGGGTGTGGCACGTGGGGGGTGATATTCACGGCGTTGTTCGCAAAAAAGGAGTATGTGAAGGAGGTTTACGGGTTGGGGAGGGCGCACGGGTTGCTCATGGGGGGTGGTGGGAAGTTGCTGGCGGCGCACGTGATTCAGATTCTGGTGATTGCTGGGTGGGTTAGTGCGACCATGGGACCCTTGTTTTGGGGGTTGAATAAACTGAAGCTGTTGAGGATTTCTTCAGAGGATGAGCTTGCGGGGATGGACATGACTCGCCATGGAGGCTTTGCTTATGCTTATGAGGATGATGAGACGCACAAGCATGGGATGCAGTTGAGGAGGGTTGGGCCCAACGCGTCTTCCACACCCACCACTGATGAATGA
>Glyma10g26690.1 sequence type=predicted peptide gene model=Glyma10g26690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLPACPAEQLAQLLGPNTTDASAAASLICGQFAAVDSKFVDTAFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNGFIGKHFFGLKDIPSSSYDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASAFKITDRLFSTGVIDFAGSGVVHMVGGIAGLWGALIEGPRMGRFDHAGRAVALRGHSASLVVLGTFLLWFGWYGFNPGSFNKILLTYGNSGNYYGQWSAVGRTAVTTTLAGSTAALTTLFGKRVISGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVASIVLIACNKLAEKVKFDDPLEAAQLHGGCGTWGVIFTALFAKKEYVKEVYGLGRAHGLLMGGGGKLLAAHVIQILVIAGWVSATMGPLFWGLNKLKLLRISSEDELAGMDMTRHGGFAYAYEDDETHKHGMQLRRVGPNASSTPTTDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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