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Report for Sequence Feature Glyma10g26450

Feature Type:gene_model
Chromosome:Gm10
Start:34811615
stop:34849713
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g26450
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24320AT Annotation by Michelle Graham. TAIR10: MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118 SoyBaseE_val: 0ISS
GO:0000002GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial genome maintenance SoyBaseN/AISS
GO:0000710GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic mismatch repair SoyBaseN/AISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0006200GO-bp Annotation by Michelle Graham. GO Biological Process: ATP catabolic process SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006298GO-bp Annotation by Michelle Graham. GO Biological Process: mismatch repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009411GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0016444GO-bp Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0032042GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial DNA metabolic process SoyBaseN/AISS
GO:0043570GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of DNA repeat elements SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA recombination SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0000228GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0032301GO-cc Annotation by Michelle Graham. GO Cellular Compartment: MutSalpha complex SoyBaseN/AISS
GO:0000400GO-mf Annotation by Michelle Graham. GO Molecular Function: four-way junction DNA binding SoyBaseN/AISS
GO:0003684GO-mf Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004518GO-mf Annotation by Michelle Graham. GO Molecular Function: nuclease activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
GO:0030983GO-mf Annotation by Michelle Graham. GO Molecular Function: mismatched DNA binding SoyBaseN/AISS
GO:0032137GO-mf Annotation by Michelle Graham. GO Molecular Function: guanine/thymine mispair binding SoyBaseN/AISS
GO:0032138GO-mf Annotation by Michelle Graham. GO Molecular Function: single base insertion or deletion binding SoyBaseN/AISS
KOG0217 KOG Mismatch repair ATPase MSH6 (MutS family) JGI ISS
PTHR11361Panther DNA MISMATCH REPAIR MUTS RELATED PROTEINS JGI ISS
PTHR11361:SF45Panther ATMSH1/CHM/CHM1/MSH1 (MUTL PROTEIN HOMOLOG 1), ATP JGI ISS
PF00488PFAM MutS domain V JGI ISS
PF01624PFAM MutS domain I JGI ISS
UniRef100_Q1XBQ8UniRef Annotation by Michelle Graham. Best UniRef hit: DNA mismatch repair protein n=1 Tax=Glycine max RepID=Q1XBQ8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q1XBQ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA mismatch repair protein n=1 Tax=Glycine max RepID=Q1XBQ8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g26450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g26450 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g130700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g26450
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g26450
>Glyma10g26450.2   sequence type=CDS   gene model=Glyma10g26450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAGGGTAGCCACAAGAAACGTCGCCGTTTTCTTCCCTCGTTGCTGTTCCCTCGCGCACTACACTCCTTCTCTATTTCCCATTTTCACTTCATTCGCTCCCTCTCGTTTCCTTAGAATAAATGGATGTGTAAAGAATGTGTCGAGTTATACGGATAAGAAGGTTTCAAGGGGGAGTAGTAGGGCCACCAAGAAGCCCAAAATACCAAATAACGTTTTAGATGATAAAGACCTTCCTCACATACTGTGGTGGAAGGAGAGGTTGCAAATGTGCAGAAAGTTTTCAACTGTCCAGTTAATTGAAAGGCTTGATTTTTCTAATTTGCTTGGCCTGGATTCCAATTTGAAAAATGGAAGTCTGAAGGAAGGAACACTCAACTACGAAATGTTGCAGTTCAAGTCAAAATTTCCACGTCAAGTATTGCTCTGCAGAGTTGGGGATTTCTACGAAGCTTGGGGAATAGATGCTTGTGTGCTCGTTGAATATGCTGGTCTAAATCCCTTCGGTGGTCTGCGATCGGATAGCATTCCAAGAGCTGGTTGTCCTGTTGTGAATCTTCGACAGACTTTAGATGATTTGACACAAAATGGTTTTTCAGTGTGCATTGTGGAGGAAGTTCAGGGCCCAACTCAAGTTCGATCAAGAAAACGCCGCTTTATATCTGGGCACGCTCATCCTGGAAATCCTTATGTATATGGACTTGCTGCAGTTGATCACGATCTTAACTTTCCAGAACCAATGCCTGTAGTAGGAATATCTCATTCTGCGAGGGGTTATTGCATTAATATGGTACTAGAGACCATGAAGACATATTCTTCTGAAGATTGCTTGACAGAAGAAGCAGTTGTTACGAAGCTTCGTACTTGCCAATATCATTACTTATTTTTGCATACATCCTTGAGGCGGAATTCTTGTGGAACCTGCAACTGGGGAGAATTTGGTGAGGGAGGGCTATTATGGGGAGAATGTAGTTCTAGACATTTTGATTGGTTTGATGGCAACCCTGTCTCCGATCTTTTGGCCAAGGTAAAGGAACTTTATAGTATTGATGATGAGGTTACCTTTCGGAACACAACTGTGTCTTCAGGACATAGGGCTCGACCATTAACTCTTGGAACATCTACTCAAATTGGTGCCATTCCAACAGAAGGAATACCTTCTTTGTTGAAGGTTTTACTTCCATCAAATTGCAATGGATTACCAGTATTGTACATAAGGGAACTTCTTTTGAATCCTCCTTCATATGAGATTGCATCCAAAATTCAAGCAACATGCAAACTTATGAGCAGTGTAACGTGTTCAATTCCAGAATTTACATGTGTTTCGTCAGCAAAGCTTGTAAAGCTACTTGAATGGAGGGAGGTCAATCATATGGAATTTTGTAGAATAAAGAATGTACTGGATGAAATTTTGCAGATGTATAGTACCTCTGAGCTCAATGAAATATTGAAACATTTAATCGAGCCCACATGGGTGGCAACTGGGTTAGAAATTGACTTTGAAACCTTGGTTGCAGGATGTGAGATCGCATCTAGTAAGATTGGTGAAATAGTATCTCTGGATGATGAGAATGATCAGAAAATCAACTCGTTCTCTTTTATTCCTCACGAATTTTTTGAGGATATGGAGTCTAAATGGAAAGGTCGAATAAAAAGAATCCACATAGATGATGTATTCACTGCAGTGGAAAAAGCAGCTGAGGCCTTACATATAGCAGTCACTGAAGATTTTGTTCCTGTTGTTTCTAGAATAAAGGCTATTGTAGCCCCTCTCGGAGGTCCTAAGGGAGAAATATCTTATGCTCGGGAGCAAGAAGCAGTTTGGTTCAAAGGCAAACGCTTTACACCGAATTTGTGGGCTGGTAGCCCTGGAGAGGAACAAATTAAACAGCTTAGGCATGCTTTAGATTCTAAAGGTAGAAAGGTAGGGGAGGAATGGTTTACCACACCAAAGGTCGAGGCTGCATTAACAAGGTACCATGAAGCAAATGCCAAGGCAAAAGAAAGAGTTTTGGAAATTTTAAGGGGACTCGCTGCTGAGTTGCAATACAGTATAAACATTCTTGTCTTTTCTTCCATGTTGCTTGTTATTGCCAAAGCTTTATTTGCTCATGCAAGTGAAGGGAGAAGAAGGAGATGGGTCTTTCCCACGCTTGTAGAATCCCATGGGTTTGAGGATGTGAAGTCATTGGACAAAACCCATGGGATGAAGATAAGTGGTTTATTGCCATATTGGTTCCACATAGCAGAAGGTGTTGTGCGTAATGATGTTGATATGCAATCATTATTTCTGTTGACAGGACCGAATGGTGGTGGGAAATCAAGTTTTCTTAGGTCAATTTGTGCTGCTGCACTACTTGGGATATGTGGACTCATGGTTCCTGCAGAATCAGCCCTAATTCCTTATTTTGACTCCATCACGCTTCATATGAAGTCATATGATAGTCCAGCTGATAAAAAGAGTTCCTTTCAGGTTGAAATGTCAGAACTTCGATCCATCATTGGCGGAACAACCAACAGGAGCCTTGTACTTGTTGATGAAATATGCCGAGGAACAGAAACTGCAAAAGGGACTTGCATTGCTGGTAGCATCATTGAAACCCTTGATGGAATTGGGTGTCTGGGTATTGTATCCACTCACTTGCATGGAATATTTACTTTGCCCCTAAACAAAAAAAACACTGTGCACAAAGCAATGGGCACAACATCCATTGATGGACAAATAATGCCTACATGGAAGTTGACAGATGGAGTTTGTAAAGAAAGTCTTGCTTTTGAAACGGCTAAGAGGGAAGGAATTCCTGAGCATATTGTTAGAAGAGCTGAATATCTTTATCAGTTGGTTTATGCTAAGGAAATGCTTTTTGCAGAAAATTTCCCAAATGAAGAAAAGTTTTCTACCTGCATCAATGTTAATAATTTGAATGGAACACATCTTCATTCAAAAAGGTTCCTATCAGGAGCTAATCAAATGGAAGTTTTACGCGAGGAAGTTGAGAGAGCTGTCACTGTGATTTGCCAGGATCATATAAAGGACCTAAAATGCAAAAAGATTGCATTGGAGCTTACTGAGATAAAATGTCTCATAATTGGTACAAGGGAGCTACCACCTCCATCGGTTGTAGGTTCTTCAAGCGTCTATGTGATGTTCAGACCAGATAAGAAACTCTATGTAGGAGAGACTGATGATCTCGAGGGACGGGTCCGAAGACATCGATTAAAGGAAGGAATGCATGATGCATCATTCCTTTATTTTCTTGTCCCAGGTAAAAGCTTGGCATGCCAATTTGAATCTCTGCTCATCAACCAACTTTCTGGTCAAGGCTTCCAACTGAGCAATATAGCTGATGGTAAACATAGGAATTTTGGCACTTCCAACCTGTATACATAA
Predicted protein sequences of Glyma10g26450
>Glyma10g26450.2   sequence type=predicted peptide   gene model=Glyma10g26450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRVATRNVAVFFPRCCSLAHYTPSLFPIFTSFAPSRFLRINGCVKNVSSYTDKKVSRGSSRATKKPKIPNNVLDDKDLPHILWWKERLQMCRKFSTVQLIERLDFSNLLGLDSNLKNGSLKEGTLNYEMLQFKSKFPRQVLLCRVGDFYEAWGIDACVLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTQNGFSVCIVEEVQGPTQVRSRKRRFISGHAHPGNPYVYGLAAVDHDLNFPEPMPVVGISHSARGYCINMVLETMKTYSSEDCLTEEAVVTKLRTCQYHYLFLHTSLRRNSCGTCNWGEFGEGGLLWGECSSRHFDWFDGNPVSDLLAKVKELYSIDDEVTFRNTTVSSGHRARPLTLGTSTQIGAIPTEGIPSLLKVLLPSNCNGLPVLYIRELLLNPPSYEIASKIQATCKLMSSVTCSIPEFTCVSSAKLVKLLEWREVNHMEFCRIKNVLDEILQMYSTSELNEILKHLIEPTWVATGLEIDFETLVAGCEIASSKIGEIVSLDDENDQKINSFSFIPHEFFEDMESKWKGRIKRIHIDDVFTAVEKAAEALHIAVTEDFVPVVSRIKAIVAPLGGPKGEISYAREQEAVWFKGKRFTPNLWAGSPGEEQIKQLRHALDSKGRKVGEEWFTTPKVEAALTRYHEANAKAKERVLEILRGLAAELQYSINILVFSSMLLVIAKALFAHASEGRRRRWVFPTLVESHGFEDVKSLDKTHGMKISGLLPYWFHIAEGVVRNDVDMQSLFLLTGPNGGGKSSFLRSICAAALLGICGLMVPAESALIPYFDSITLHMKSYDSPADKKSSFQVEMSELRSIIGGTTNRSLVLVDEICRGTETAKGTCIAGSIIETLDGIGCLGIVSTHLHGIFTLPLNKKNTVHKAMGTTSIDGQIMPTWKLTDGVCKESLAFETAKREGIPEHIVRRAEYLYQLVYAKEMLFAENFPNEEKFSTCINVNNLNGTHLHSKRFLSGANQMEVLREEVERAVTVICQDHIKDLKCKKIALELTEIKCLIIGTRELPPPSVVGSSSVYVMFRPDKKLYVGETDDLEGRVRRHRLKEGMHDASFLYFLVPGKSLACQFESLLINQLSGQGFQLSNIADGKHRNFGTSNLYT*






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