Glyma10g26240 - SoyBase

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Report for Sequence Feature Glyma10g26240

Feature Type:	gene_model
Chromosome:	Gm10
Start:	34386315
stop:	34400031
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g26240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34260	AT	Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein \| chr2:14465899-14468416 FORWARD LENGTH=353	SoyBase	E_val: 1.00E-174	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0010197	GO-bp	Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0315	KOG	G-protein beta subunit-like protein (contains WD40 repeats)	JGI		ISS
KOG2444	KOG	WD40 repeat protein	JGI		ISS
PTHR22840	Panther	FAMILY NOT NAMED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7JRY6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-40 repeat protein n=1 Tax=Medicago truncatula RepID=G7JRY6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LAN2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAN2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g26240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g26240 not represented in the dataset	Glyma10g26240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g26240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g129800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g26240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g26240

Limit To All Plant Sequences

>Glyma10g26240.4   sequence type=transcript   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTACCACCAAATCAAACAAATTATTAAACCATTTTCTCAAAGATGGGTCAACCCACGGGGGCTTTATTTTTACGGGTTGATCCAATTTGCCAATGCTACGTCTGCACCGCGTTTAGGGTTTAGGGTTTTTGCACTCTCAGCCCATTCAAGACAAGCGATTACAGCTTCCCGTAGTTGACGGTATCACTCTAAATTAGAATCAAGAAAATTCTCTGAAACATCAAAGCATAGTCTTGGCTTAGAACAGGTGAAGAATGGAGATAAGTTTGGGGAAACTCGCATTTGACATTGATTTTCATCCCTCGGATAATCTCGTTGCTGCCGGTCTAATTACCGGTGACCTTCACCTATACCGTTATACTCCTGATAGCACCCCTGTGAGGATGTTGGAAGTTCATGCTCACACTGAGTCCTGCAGGGCTGCTCGATTCATCAATGGTGGACGTGCGATCTTGACAGGTTCTCCTGATTGCTCGATACTTGCTACGGATGTGGAAACTGGATCTACAATTGCTCGTCTTGATGATGCTCATGAGGCTGCAGTAAATAGATTGATAAACTTGACTGAGTCAACTGTTGCCTCAGGAGATGATGAAGGTTGTATAAAGGTATGGGATACCAGAGAGCGTTCTTGTTGCAATTCTTTTAATGCTCATGAAGATTACATTTCAGACATGACTTTCGTTTCTGATGCAATGAAACTGTTGGCTACAAGTGGAGATGGGACACTGTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAGTCTGAATTTTCTGAAGATGAGCTATTGTCTGTGGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAGTCATTCTATTGTATTCATGGGGATGCTTCAAGGATTGTAGCGATCGATTTACTGATCTCTCTTCTAACTCTATTGATGCTATGTTGAAGCTTGATGAAGATAGGATTATTACTGGATCAGAGAATGGGATAATCAACCTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATTGCAGAACACTCAGAGTATCCTGTTGAGTGTCTTGCATTCTCCCATGATAAAAAGTTCCTTGGAAGCATTGCCCATGATCAAATGTTAAAGCTATGGGACTTGGATAATATTCTACAAGGCTCAGGAAACACACAAAGAAATGAAGCTGGAGGAGCTGTTGACAGTGACGATGATGAGATGGATCTAGATGATGATCCTTCAAAGATTAATAAAGGGAACAAGAGAAAGAATGCAAATAATGGGAACGCCCTAGGTGGTTCGAACAACTTCTTTGCAGATTTGTAGGAGGTTTGAATGCATCTCTGCTCAAATGTGTTGATCACCCAATTAGAACACTTGCGTGATTTTCTAATCAATATTAAGTTGAAGGCGCCCCTTCCAAAAATTGATATATACATTGAACCGTGTCCAGATGATGGCTTTTTTGTGCGTTATATTGGTACAAGGATGCAAATTTTTTTCTTCAATATATGAAGTAATTCATTATGTTAAATTATGAAATACCGTGACCATTTTATTGTGGTTTCCTATTATATATTTGTGTTGTTTAATTGAAGTTCCAATTTCAAAGTC

>Glyma10g26240.5   sequence type=transcript   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACGTCTGCACCGCGTTTAGGGTTTAGGGTTTTTGCACTCTCAGCCCATTCAAGACAAGCGATTACAGCTTCCCGTAGTTGACGAACAGGTGAAGAATGGAGATAAGTTTGGGGAAACTCGCATTTGACATTGATTTTCATCCCTCGGATAATCTCGTTGCTGCCGGTCTAATTACCGGTGACCTTCACCTATACCGTTATACTCCTGATAGCACCCCTGTGAGGATGTTGGAAGTTCATGCTCACACTGAGTCCTGCAGGGCTGCTCGATTCATCAATGGTGGACGTGCGATCTTGACAGGTTCTCCTGATTGCTCGATACTTGCTACGGATGTGGAAACTGGATCTACAATTGCTCGTCTTGATGATGCTCATGAGGCTGCAGTAAATAGATTGATAAACTTGACTGAGTCAACTGTTGCCTCAGGAGATGATGAAGGTTGTATAAAGGTATGGGATACCAGAGAGCGTTCTTGTTGCAATTCTTTTAATGCTCATGAAGATTACATTTCAGACATGACTTTCGTTTCTGATGCAATGAAACTGTTGGCTACAAGTGGAGATGGGACACTGTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAGTCTGAATTTTCTGAAGATGAGCTATTGTCTGTGGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAGTCATTCTATTGTATTCATGGGGATGCTTCAAGGATTGTAGCGATCGATTTACTGATCTCTCTTCTAACTCTATTGATGCTATGTTGAAGCTTGATGAAGATAGGATTATTACTGGATCAGAGAATGGGATAATCAACCTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATTGCAGAACACTCAGAGTATCCTGTTGAGTGTCTTGCATTCTCCCATGATAAAAAGTTCCTTGGAAGCATTGCCCATGATCAAATGTTAAAGCTATGGGACTTGGATAATATTCTACAAGGCTCAGGAAACACACAAAGAAATGAAGCTGGAGGAGCTGTTGACAGTGACGATGATGAGATGGATCTAGATGATGATCCTTCAAAGATTAATAAAGGGAACAAGAGAAAGAATGCAAATAATGGGAACGCCCTAGGTGGTTCGAACAACTTCTTTGCAGATTTGTAGGAGGTTTGAATGCATCTCTGCTCAAATGTGTTGATCACCCAATTAGAACACTTGCGTGATTTTCTAATCAATATTAAGTTGAAGGCGCCCCTTCCAAAAATTGATATATACATTGAACCGTGTCCAGATGATGGCTTTTTTGTGCGTTATATTGGTACAAGGATGCAAATTTTTTTCTTCAATATATGAAGTAATTCATTATGTTAAATTATGAAATACCGTGACCATTTTATTGTGGTTTCCTATTATATATTTGTGTTGTTTAATTGAAGTT

Coding sequences of Glyma10g26240

Limit To All Plant Sequences

>Glyma10g26240.2   sequence type=CDS   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAAGTTTGGGGAAACTCGCATTTGACATTGATTTTCATCCCTCGGATAATCTCGTTGCTGCCGGTCTAATTACCGGTGACCTTCACCTATACCGTTATACTCCTGATAGCACCCCTGTGAGGATGTTGGAAGTTCATGCTCACACTGAGTCCTGCAGGGCTGCTCGATTCATCAATGGTGGACGTGCGATCTTGACAGGTTCTCCTGATTGCTCGATACTTGCTACGGATGTGGAAACTGGATCTACAATTGCTCGTCTTGATGATGCTCATGAGGCTGCAGTAAATAGATTGATAAACTTGACTGAGTCAACTGTTGCCTCAGGAGATGATGAAGGTTGTATAAAGGTATGGGATACCAGAGAGCGTTCTTGTTGCAATTCTTTTAATGCTCATGAAGATTACATTTCAGACATGACTTTCGTTTCTGATGCAATGAAACTGTTGGCTACAAGTGGAGATGGGACACTGTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAGTCTGAATTTTCTGAAGATGAGCTATTGTCTGTGGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAGTCATTCTATTGTATTCATGGGGATGCTTCAAGGATTGTAGCGATCGATTTACTGATCTCTCTTCTAACTCTATTGATGCTATGTTGAAGCTTGATGAAGATAGGATTATTACTGGATCAGAGAATGGGATAATCAACCTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATTGCAGAACACTCAGAGTATCCTGTTGAGTGTCTTGGTAACATACAGTCTCTTCCTCTTAGCATTTAA

>Glyma10g26240.4   sequence type=CDS   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAAGTTTGGGGAAACTCGCATTTGACATTGATTTTCATCCCTCGGATAATCTCGTTGCTGCCGGTCTAATTACCGGTGACCTTCACCTATACCGTTATACTCCTGATAGCACCCCTGTGAGGATGTTGGAAGTTCATGCTCACACTGAGTCCTGCAGGGCTGCTCGATTCATCAATGGTGGACGTGCGATCTTGACAGGTTCTCCTGATTGCTCGATACTTGCTACGGATGTGGAAACTGGATCTACAATTGCTCGTCTTGATGATGCTCATGAGGCTGCAGTAAATAGATTGATAAACTTGACTGAGTCAACTGTTGCCTCAGGAGATGATGAAGGTTGTATAAAGGTATGGGATACCAGAGAGCGTTCTTGTTGCAATTCTTTTAATGCTCATGAAGATTACATTTCAGACATGACTTTCGTTTCTGATGCAATGAAACTGTTGGCTACAAGTGGAGATGGGACACTGTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAGTCTGAATTTTCTGAAGATGAGCTATTGTCTGTGGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAGTCATTCTATTGTATTCATGGGGATGCTTCAAGGATTGTAGCGATCGATTTACTGATCTCTCTTCTAACTCTATTGATGCTATGTTGAAGCTTGATGAAGATAGGATTATTACTGGATCAGAGAATGGGATAATCAACCTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATTGCAGAACACTCAGAGTATCCTGTTGAGTGTCTTGCATTCTCCCATGATAAAAAGTTCCTTGGAAGCATTGCCCATGATCAAATGTTAAAGCTATGGGACTTGGATAATATTCTACAAGGCTCAGGAAACACACAAAGAAATGAAGCTGGAGGAGCTGTTGACAGTGACGATGATGAGATGGATCTAGATGATGATCCTTCAAAGATTAATAAAGGGAACAAGAGAAAGAATGCAAATAATGGGAACGCCCTAGGTGGTTCGAACAACTTCTTTGCAGATTTGTAG

>Glyma10g26240.5   sequence type=CDS   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAAGTTTGGGGAAACTCGCATTTGACATTGATTTTCATCCCTCGGATAATCTCGTTGCTGCCGGTCTAATTACCGGTGACCTTCACCTATACCGTTATACTCCTGATAGCACCCCTGTGAGGATGTTGGAAGTTCATGCTCACACTGAGTCCTGCAGGGCTGCTCGATTCATCAATGGTGGACGTGCGATCTTGACAGGTTCTCCTGATTGCTCGATACTTGCTACGGATGTGGAAACTGGATCTACAATTGCTCGTCTTGATGATGCTCATGAGGCTGCAGTAAATAGATTGATAAACTTGACTGAGTCAACTGTTGCCTCAGGAGATGATGAAGGTTGTATAAAGGTATGGGATACCAGAGAGCGTTCTTGTTGCAATTCTTTTAATGCTCATGAAGATTACATTTCAGACATGACTTTCGTTTCTGATGCAATGAAACTGTTGGCTACAAGTGGAGATGGGACACTGTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAGTCTGAATTTTCTGAAGATGAGCTATTGTCTGTGGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAGTCATTCTATTGTATTCATGGGGATGCTTCAAGGATTGTAGCGATCGATTTACTGATCTCTCTTCTAACTCTATTGATGCTATGTTGAAGCTTGATGAAGATAGGATTATTACTGGATCAGAGAATGGGATAATCAACCTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATTGCAGAACACTCAGAGTATCCTGTTGAGTGTCTTGCATTCTCCCATGATAAAAAGTTCCTTGGAAGCATTGCCCATGATCAAATGTTAAAGCTATGGGACTTGGATAATATTCTACAAGGCTCAGGAAACACACAAAGAAATGAAGCTGGAGGAGCTGTTGACAGTGACGATGATGAGATGGATCTAGATGATGATCCTTCAAAGATTAATAAAGGGAACAAGAGAAAGAATGCAAATAATGGGAACGCCCTAGGTGGTTCGAACAACTTCTTTGCAGATTTGTAG

Predicted protein sequences of Glyma10g26240

Limit To All Plant Sequences

>Glyma10g26240.2   sequence type=predicted peptide   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEISLGKLAFDIDFHPSDNLVAAGLITGDLHLYRYTPDSTPVRMLEVHAHTESCRAARFINGGRAILTGSPDCSILATDVETGSTIARLDDAHEAAVNRLINLTESTVASGDDEGCIKVWDTRERSCCNSFNAHEDYISDMTFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGVILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAEHSEYPVECLGNIQSLPLSI*

>Glyma10g26240.4   sequence type=predicted peptide   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEISLGKLAFDIDFHPSDNLVAAGLITGDLHLYRYTPDSTPVRMLEVHAHTESCRAARFINGGRAILTGSPDCSILATDVETGSTIARLDDAHEAAVNRLINLTESTVASGDDEGCIKVWDTRERSCCNSFNAHEDYISDMTFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGVILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAEHSEYPVECLAFSHDKKFLGSIAHDQMLKLWDLDNILQGSGNTQRNEAGGAVDSDDDEMDLDDDPSKINKGNKRKNANNGNALGGSNNFFADL*

>Glyma10g26240.5   sequence type=predicted peptide   gene model=Glyma10g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEISLGKLAFDIDFHPSDNLVAAGLITGDLHLYRYTPDSTPVRMLEVHAHTESCRAARFINGGRAILTGSPDCSILATDVETGSTIARLDDAHEAAVNRLINLTESTVASGDDEGCIKVWDTRERSCCNSFNAHEDYISDMTFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGVILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAEHSEYPVECLAFSHDKKFLGSIAHDQMLKLWDLDNILQGSGNTQRNEAGGAVDSDDDEMDLDDDPSKINKGNKRKNANNGNALGGSNNFFADL*

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