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Report for Sequence Feature Glyma10g25781

Feature Type:gene_model
Chromosome:Gm10
Start:33853525
stop:33855658
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G05320AT Annotation by Michelle Graham. TAIR10: beta-1,2-N-acetylglucosaminyltransferase II | chr2:1936016-1937308 FORWARD LENGTH=430 SoyBaseE_val: 0ISS
GO:0009312GO-bp Annotation by Michelle Graham. GO Biological Process: oligosaccharide biosynthetic process SoyBaseN/AISS
GO:0042732GO-bp Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005795GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0008375GO-mf Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity SoyBaseN/AISS
GO:0008455GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity SoyBaseN/AISS
KOG2791 KOG N-acetylglucosaminyltransferase JGI ISS
PTHR12871Panther BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II JGI ISS
PF05060PFAM N-acetylglucosaminyltransferase II (MGAT2) JGI ISS
UniRef100_B9SW46UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,2-n-acetylglucosaminyltransferase II, putative n=1 Tax=Ricinus communis RepID=B9SW46_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233DD7FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DD7F related cluster n=1 Tax=unknown RepID=UPI000233DD7F SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g25781 not represented in the dataset

Glyma10g25781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g20280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g128800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g25781.1   sequence type=CDS   gene model=Glyma10g25781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAGTTCCACTATTATGGCTGTTTCCAAGAAACCCCGCCTTAGGCTTAGAGATGTGGCTCTGTGCCGTCTGTTATCTGTGGTGTTTGTTACTTTATGTGGGGTTTTGCTTATGATATTTCTCCTTGCATCAAATTCAACACCAAGTGGGACTCATGATATCATAGACAATATTGATGCATACCATCATGACTTGAAGTTTGAAAAGTTGCATGATCTCCCCCATCAGAATGACTTGTCACTTAGATTGGAAAGGCTAAATGGGTTGCCACCAAGAAACTTGGATTTGTATCCCACACTCGCGAGGGATCATATCGTTGTTGTTTTGTATGTTCACAACCGGCCTCAGTATCTTAAAGTGGTTGTTGAGAGCCTTTCGCGGGTGGTGGGGATTAGTGAGACCTTATTAATTGTTAGTCATGATGGGTACTTTGAGGAGATGAACAAGATAATTGATGGTATCAAGTTTTGCCAAGTTAAACAGATCTATGCTACCTATTCGCCCCATCTGTTTTCTGATAGTTTTCCTGGTGTCTCGGCTAATGACTGCAAGGAGAAAGATGATGCCGGAGAAAAACTTTGTGAGGGGAATCCTGATCAGTATGGAAACCACCGCTCGCCAAAGATTGTATCGCTGAAGCATCACTGGTGGTGGATGATGAACACAATATGGAATGGGTTGAGAGAGACAAGGGATCATTCTGGTCATATTCTTTTCATTGAAGAAGACCACTTCATATTTCCCAATGCGTATCACAATCTACAGGTTCTAACTTCACTGAAGCCTGAAAAGTGTCCTGATTGTTATGCTGCTAATTTAGCACCTTCTGATGTGAACTCGAGAGGCGAAGGGTGGGCAACTTTGATTGCAGAGAGAATGGGGAATGTCGGTTACTCTTTCAATCGAACTGTTTGGAAGAAAATACACAATAAGGCTAGAGAGTTTTGTTTCTTTGATGACTATAATTGGGACATCACAATGTGGGCAACTGTTTATCCTTCATTTGGTAGTCCTGTTTACACATTACGCGGTCCTAGGACCAGTGCTGTTCATTTTGGGAGATGTGGTTTGCATCAGGGTCAGGGGGAGAATAAGGCTTGCATTGATAATGGCATGGTGAACATTAATGTAGAAGAGCCTGACACAGTTTCTAACATTGAATTAAACTGGGAAGTTCACACCTTTAAGAATCAGCCTGGTTATAAAGCAGGGTTTAAAGGTTGGGGAGGTTGGGGGGATAATAGAGATCGTCACTTATGCTTGAGTTTTGCTAAAATGTACCACTCCATAGGCACAGCATCTCCATTATAA

>Glyma10g25781.1   sequence type=predicted peptide   gene model=Glyma10g25781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSSTIMAVSKKPRLRLRDVALCRLLSVVFVTLCGVLLMIFLLASNSTPSGTHDIIDNIDAYHHDLKFEKLHDLPHQNDLSLRLERLNGLPPRNLDLYPTLARDHIVVVLYVHNRPQYLKVVVESLSRVVGISETLLIVSHDGYFEEMNKIIDGIKFCQVKQIYATYSPHLFSDSFPGVSANDCKEKDDAGEKLCEGNPDQYGNHRSPKIVSLKHHWWWMMNTIWNGLRETRDHSGHILFIEEDHFIFPNAYHNLQVLTSLKPEKCPDCYAANLAPSDVNSRGEGWATLIAERMGNVGYSFNRTVWKKIHNKAREFCFFDDYNWDITMWATVYPSFGSPVYTLRGPRTSAVHFGRCGLHQGQGENKACIDNGMVNINVEEPDTVSNIELNWEVHTFKNQPGYKAGFKGWGGWGDNRDRHLCLSFAKMYHSIGTASPL*







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