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Report for Sequence Feature Glyma10g25696

Feature Type:gene_model
Chromosome:Gm10
Start:33725377
stop:33740526
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g25696
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23980AT Annotation by Michelle Graham. TAIR10: BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714 SoyBaseE_val: 2.00E-152ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010091GO-bp Annotation by Michelle Graham. GO Biological Process: trichome branching SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0048826GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon morphogenesis SoyBaseN/AISS
GO:0051781GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
UniRef100_Q9LIQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein BLISTER n=1 Tax=Arabidopsis thaliana RepID=Q9LIQ9_ARATH SoyBaseE_val: 1.00E-149ISS
UniRef100_UPI000233DD7AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DD7A related cluster n=1 Tax=unknown RepID=UPI000233DD7A SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g25696
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g25696 not represented in the dataset
Glyma10g25696 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g25696
ParalogEvidenceComments
Glyma20g20053 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g25696 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g128300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g25696
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g25696
>Glyma10g25696.1   sequence type=CDS   gene model=Glyma10g25696   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGGCTCAGGTGCTGCCAAACTCCACCGCGTCGTCGCGGAAGCAAGAGCATCTTGAAGCTGGCAAGCGCCGGCTGGAGGAGTTTCGTAAAAAGAAAGCTGCAGAGCGGACCAAGAAGGCTGCTTCCTCTGGCCAAGTTCACAATTCTGATGATAGCTTGAATAAAAAACAATCTTCTGAAGTTGAAAATGTACGTGTTAATGAGTCAGATGGAGTTACCACGTCTGATGCTGTCGGGGGATCTGTTACTGACACTTCAACTTTGGGGATGAGGAATGATAAGAACCTGAATTTGTTTAGCCAAAGTAGTAATCAAGGGTCTTTGGCTGGTAGTACGTTTCTTACAAGAAATGATCTTAATATGTCATCTACAAGTCTGGGGGAAGCACATTCCAATATTGATGAAGGTAAGAGATATAATGCTTCTTCTGTTACCGCATCTGCTGATTTTAGTCAAAACAATGAGAGAAATAAGGTGAATGATATATATGGAATTCATGCTGTTGGTGTTGATGGGATTCCATATGTGACAACAAACCACCAAAGCGTTCCTCTATGCTCGCAAGAAAGTCAAGAGTTTGATAATCATGCGACATCTAGTCTTCATGGGGTGAATGACAACCAATCAAACAAGAGTAACAGTTCTTTGAAGGATTATGCAGTTACTGATAATTTCTCTTCGTATTTTCCTTCAAAAATCACCCCTCAGAACTCTGTTGATACTCCACTGCAAATCAAGCCAACGAATTCTAGCACTTTTGATAGTGGCTACTCACATAGTTTGCTTTCTGGAGGTTTCAGTGATTCTTTCAGTTCCAAGTTTAGAGAGACTGTTACTAGCTCTGATAATAATTTGCCTAGTCTTCATGGTGCAACTATGCCAAAATATGATTCCACAGGTTATGAAGCAAGAAATTCTTCTAATCATACACCAATACATTCATTGCCAACGGAATCTAGTTCTCGGAGGTCACGTCCATCTTTTCTCGATTCTCTTAATGTCACCAGACCTTCTTTGGGGTCTCCATTTCATCAATCGGAGCAAGATTCCTTGATGTCCAATTATTTAGAATCAAGCAGCAATGATATATCAGGATCTGCTTATTTCCATAAGCCGTCTGAAGAGACTAAAATTATGCCACTTTTCTCCAATTTTACAACTGCAAATGTTCATAGTTCACTTGAGCCGTTAACAACCCCTTCAGTTGTTGATAATGACAATCAAGGTGCTCTGATAACAAGCACTAGGGAAAGTGGCATGGAGAAGAAGCACGATTATTACTCATCTTCACAAAATGAAGACTTCACTGCTTTAGAACAGCATATTGAAGATCTAACAAAAGAAAAGTTTTCTTTGCAACGTGCTCTTGAGGCTTCTCGAACGTTAGCAGAGTCACTAGCTACTGAAAATTCAACTCTGACTGATAATTATAATCAACAGAGAAGTGTCGTCAACCAATTAAAATCAGACATGGAAAATTTACACGAAGATATCAAAGCCCGACTGGTTGAGCTTGAGGCTATCAAGAGTGAATATACAAATGCACAACTAGAATGTAATGCAGCTGATGAGCGTGCTAAGTTATTGGCATCTGAAGTAATTGGTTTAGAGGAGAAGGCACTGAGACTAAGATCCAGTGAACTAAAGCTTGAGAAGCAGTTGGAAAATGCAAAAGAAGAAATTTCTTCATACAGAAAGAAAATGTCTAGCCTAGACAAAGACCGCCATGATTTGCAGTCAACCATCGAGGCTCTTCAAGAGGAAAAGAAGATGTTGCTTTCTAAGCTGCGAAAGGCTTCAGGAATTGGAAAGTCTATTGAGAATCAAACAAGTAAAAGGGATGTTTCTACATCTACGGAGGATTTAGCAAGCGAAGATCCTGCTTCTAACTCTTCCAACCCAGAAATCAATGATAATGCTGCTGAGGCCTCTAGTTTGTCCTCAGTTACTGAAACTAGACACTCATCTTTTGGAGTTTCTCCTGTGAATATTCCTCACGATCAGATGAGAATGATTGAGAACATTAATGCACTTATTTCTGAGCTGGCATTGGAGAAAGAAGAATTGATAAAAGCCTTGACATCTGAATCATCTGAGTGTTCTAGGATGAAGGAAATCAACATGGAGTTGTCCCGAAAGCTTGAGGTCCAGACACAAAGATTAGAGCTTTTGACTGCTCAAAGCATGGTCAATGAAAATATTTCTGCAAAGCAACCAGATTCTCGTGCTATGTATGAGAACACCTCATATGCAGATGAGGGTGATGAGGTTGTGGAAAGGGTGTTGGGATGGATTATGAAGCTCTTTCCTGGTGGACCTTCAAGACGGAGAACCAGCAAACTTCTTTGA
Predicted protein sequences of Glyma10g25696
>Glyma10g25696.1   sequence type=predicted peptide   gene model=Glyma10g25696   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAQVLPNSTASSRKQEHLEAGKRRLEEFRKKKAAERTKKAASSGQVHNSDDSLNKKQSSEVENVRVNESDGVTTSDAVGGSVTDTSTLGMRNDKNLNLFSQSSNQGSLAGSTFLTRNDLNMSSTSLGEAHSNIDEGKRYNASSVTASADFSQNNERNKVNDIYGIHAVGVDGIPYVTTNHQSVPLCSQESQEFDNHATSSLHGVNDNQSNKSNSSLKDYAVTDNFSSYFPSKITPQNSVDTPLQIKPTNSSTFDSGYSHSLLSGGFSDSFSSKFRETVTSSDNNLPSLHGATMPKYDSTGYEARNSSNHTPIHSLPTESSSRRSRPSFLDSLNVTRPSLGSPFHQSEQDSLMSNYLESSSNDISGSAYFHKPSEETKIMPLFSNFTTANVHSSLEPLTTPSVVDNDNQGALITSTRESGMEKKHDYYSSSQNEDFTALEQHIEDLTKEKFSLQRALEASRTLAESLATENSTLTDNYNQQRSVVNQLKSDMENLHEDIKARLVELEAIKSEYTNAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLEKQLENAKEEISSYRKKMSSLDKDRHDLQSTIEALQEEKKMLLSKLRKASGIGKSIENQTSKRDVSTSTEDLASEDPASNSSNPEINDNAAEASSLSSVTETRHSSFGVSPVNIPHDQMRMIENINALISELALEKEELIKALTSESSECSRMKEINMELSRKLEVQTQRLELLTAQSMVNENISAKQPDSRAMYENTSYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL*






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