Glyma10g25630 - SoyBase

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Report for Sequence Feature Glyma10g25630

Feature Type:	gene_model
Chromosome:	Gm10
Start:	33611943
stop:	33619001
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g25630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23990	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 60 \| chr3:8669013-8672278 FORWARD LENGTH=577	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0007005	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion organization	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042026	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein refolding	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0044267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051131	GO-bp	Annotation by Michelle Graham. GO Biological Process: chaperone-mediated protein complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005759	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0356	KOG	Mitochondrial chaperonin, Cpn60/Hsp60p	JGI		ISS
PTHR11353	Panther	CHAPERONIN	JGI		ISS
PTHR11353:SF9	Panther	CHAPERONIN-60KDA, CH60	JGI		ISS
PF00118	PFAM	TCP-1/cpn60 chaperonin family	JGI		ISS
UniRef100_B9RWQ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperonin-60kD, ch60, putative n=1 Tax=Ricinus communis RepID=B9RWQ2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LAL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAL4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g25630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g25630 not represented in the dataset	Glyma10g25630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g25630

Paralog	Evidence	Comments
Glyma20g19980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g25630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g127800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g25630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g25630

Limit To All Plant Sequences

>Glyma10g25630.1   sequence type=CDS   gene model=Glyma10g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCGCTTTGCTTCTAACCTCGCTTCCAAAGCAAGGATTGCTAGGAGTAGCAGCCACCAGATTGGAAGTAGGCTGAGTTCGAGCAGAAACTATGCGGCTAAAGACATTAGATTTGGTGTGGAGGCTCGGGCACTGATGCTTAAGGGTGTTGAAGAGCTAGCTGATGCTGTCAAAGTAACCATGGGTCCCAAGGGGCGTAATGTTGTGATTGAGCAAAGTTTTGGTGCCCCTAAAGTAACCAAAGATGGAGTAACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGGAACCACGTGCGCTACAGTCCTTACACGAGCAATATTTACTGAAGGCTGCAAATCAGTTGCGGCTGGAATGAATGCAATGGACCTGAGGCGTGGTATAAGTATGGCTGTCGATGCTGTGGTGACAAACTTGAAAAGCAGAGCAAGGATGATTAGCACATCTGAAGAAATAGCACAGGTAGGGACAATATCTGCTAACGGAGAGAGAGAAATTGGTGAGTTGATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGAGTAATCACAATTTCAGATGGCAAAACCTTATATAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTCGACAGGGGCTACATATCTCCTTATTTCATTACAAATGATAAGAACCAGAAATGTGAACTTGAAGATCCCCTCATTCTAATTCATGAGAAGAAAATCTCGAGTATAAATGCTATAGTTAAAGTCTTAGAGTTGGCTTTGAAGAGACAAAGATCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAGGTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTTCAAGATCTTGCAGTTCTCACAGGAGGAGCACTTATTACTGAAGAGCTTGGCTTGAAGCTTGAAAAAGTGGATTTGGATATGCTTGGCACCTGTAAAAAAATAACAGTTTCTAAGGATGACACTGTCATTCTTGACGGAGCAGGTGACAAGAAAGCACTTGAGGAAAGATGCGAGCAGATTAGGTCTGCAATTGAAAACAGCACCTCAGATTATGACAAGGAAAAGTTACAGGAAAGATTAGCCAAGCTTTCTGGTGGTGTTGCCGTGCTTAAGATTGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAACTAAGGCTGCTGTAGAGGAAGGCATTGTATCAGGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGACACCTGTGCTCACAATTGCATCAAATGCGGGTGTTGAGGGTGCAGTTGTTGTTGGCAAACTATTGGAACAGGAGAATCATGATCTAGGATATGATGCAGCCAAAGGTGAATATGTTGATATGGTTAAAGCTGGAATCATAGACCCTTTGAAGGTGATTAGGACAGCCTTGGTTGATGCAGCCAGTGTATCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTTCCAAACGATGATAAAGATACTCCAGCTATGGCTGGTGGCATGGGTGGCATGGGTTATTAA

Predicted protein sequences of Glyma10g25630

Limit To All Plant Sequences

>Glyma10g25630.1   sequence type=predicted peptide   gene model=Glyma10g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRFASNLASKARIARSSSHQIGSRLSSSRNYAAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNDKNQKCELEDPLILIHEKKISSINAIVKVLELALKRQRSLLIIAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAVLTGGALITEELGLKLEKVDLDMLGTCKKITVSKDDTVILDGAGDKKALEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVSGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVLTIASNAGVEGAVVVGKLLEQENHDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVSELPNDDKDTPAMAGGMGGMGY*

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