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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24030 | AT | Annotation by Michelle Graham. TAIR10: hydroxyethylthiazole kinase family protein | chr3:8679862-8680812 REVERSE LENGTH=276 | SoyBase | E_val: 1.00E-126 | ISS |
| GO:0009228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004417 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxyethylthiazole kinase activity | SoyBase | N/A | ISS |
| PTHR20857 | Panther | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE | JGI | ISS | |
| PTHR20857:SF14 | Panther | JGI | ISS | ||
| PF02110 | PFAM | Hydroxyethylthiazole kinase family | JGI | ISS | |
| UniRef100_B9RWP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyethylthiazole kinase, putative n=1 Tax=Ricinus communis RepID=B9RWP8_RICCO | SoyBase | E_val: 7.00E-132 | ISS |
| UniRef100_I1LAK9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAK9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g25550 not represented in the dataset |
Glyma10g25550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g127400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g25550.2 sequence type=transcript gene model=Glyma10g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTTTTATAATTATAGAAAAACAGCCGTTGCTCTTGAAGTCAATTCATACGTTCACGAGACCGCATCTATTCCCTTAGTACGCTGTCAACCACCGAACCGTTTGCATAATTGTTGGCTGCACTTTTTCACTTCTCAGTTCTCACCTCTTTCTGTCATTCTTCTTTCATACACTTTTTTATTTTCTCTATGGACCCAAACACAACCGAAACCGAGTGGGGTTCGAAGGCATGGCGGCTTCTCTCCGAGGTCCGTTCCCAATCCCCACTCATTCAATGCATCACCAACTTCGTCTCCATGGACATCGTCGCCAACACCCTCCTCTCCGCCGGCGCCTCCCCCGCCATGCTCCACGCCGCCGAGGAGCTCCCCGACTTCACCCCGCGCGCCGCCGCCCTCGTAGTCAACGTCGGCACGCTCTCCCCCTCCTGGCTCCCCGCCATGAAGGCCGCCGCGCGCCTTTGCATGACTCTCGCCACGCCCTGGGTGCTCGACCCCGTCGCCGCCTCCGCCTCCGCCTTCCGCCTCGACGCCTGCCGCGAACTTCTGAAGCTCAGGCCCACCGTCGTCAGGGGAAACGCCTCCGAGATCATCGCGCTCTCCCAAGCCTCCGCCGCCGCACAGCCACACACCAACGCTGCCTCCAAGGGTGTGGACAGTGTTCACAAGTCAATGGATGCGGTTGAAGCAGCAAAGTTGTTAGCTCGGACAAGTGGTGCAATAGTTGCAGTGTCAGGAGCCACGGACATTGTCACAGATGGAAATCGAGTTGTTGGGGCTCATAATGGGGTGGCGATGATGCAGAAAATAACAGCAACGGGATGTTCAGTCACTGCACTGATTGCTGCCTTTGTTGCCGTTGACAAAAGCCATGCTTTGGATGCCGCAGTGTCTGCATTAGCTGTATTTGGTGTTGCTGGTGAGCTAGGAATGAAGATGGCTAAAGGTCCTGCATCGCTTCGAATGCACTTGATAGATGAACTCTATGGGCTTGATGAATCTGCCTTGAATTCTCATGTTAATGTCACCAGTTTGTGATGAAATGTGAAGATCTGCATTCAAATTGATAATTAATTATCATAAAATTCGCATGTATCATAGTTGATAGTTGTCTATCAATGGTGTCCATTGGTTGAATTGGAAGGTGGATCGTATTAGTTAGCAATAGAGATCCCTCTATAATTTATGTCAATAATAATCACTGGTAGCTACCTCTGGTAATAACAGTTTGTTCCTGTAGTTAAAAATATCTCATGGTTTCAGCCCTTAATTTAGTTTGGTCAACATTTTGTATGTATAGGTTTATTTTGTTGAAAGTTAACTTCGTAATTTCTGTTTGATGTATAGGAATGGGTTTGGTGGAAATTGTTTATGAACTCCTGATGCATTGTTAATCAGATTGTGAACCGGTAAAGTTGAGTGTATATATGAATTAACAAATAACATTTTCTTATATGCCAT
>Glyma10g25550.1 sequence type=CDS gene model=Glyma10g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCCAAACACAACCGAAACCGAGTGGGGTTCGAAGGCATGGCGGCTTCTCTCCGAGGTCCGTTCCCAATCCCCACTCATTCAATGCATCACCAACTTCGTCTCCATGGACATCGTCGCCAACACCCTCCTCTCCGCCGGCGCCTCCCCCGCCATGCTCCACGCCGCCGAGGAGCTCCCCGACTTCACCCCGCGCGCCGCCGCCCTCGTAGTCAACGTCGGCACGCTCTCCCCCTCCTGGCTCCCCGCCATGAAGGCCGCCGCGCGCCTTTGCATGACTCTCGCCACGCCCTGGGTGCTCGACCCCGTCGCCGCCTCCGCCTCCGCCTTCCGCCTCGACGCCTGCCGCGAACTTCTGAAGCTCAGGCCCACCGTCGTCAGGGGAAACGCCTCCGAGATCATCGCGCTCTCCCAAGCCTCCGCCGCCGCACAGCCACACACCAACGCTGCCTCCAAGTCACTACACATTGTCAAGGGTGTGGACAGTGTTCACAAGTCAATGGATGCGGTTGAAGCAGCAAAGTTGTTAGCTCGGACAAGTGGTGCAATAGTTGCAGTGTCAGGAGCCACGGACATTGTCACAGATGGAAATCGAGTTGTTGGGGCTCATAATGGGGTGGCGATGATGCAGAAAATAACAGCAACGGGATGTTCAGTCACTGCACTGATTGCTGCCTTTGTTGCCGTTGACAAAAGCCATGCTTTGGATGCCGCAGTGTCTGCATTAGCTGTATTTGGTGTTGCTGGTGAGCTAGGAATGAAGATGGCTAAAGGTCCTGCATCGCTTCGAATGCACTTGATAGATGAACTCTATGGGCTTGATGAATCTGCCTTGAATTCTCATGTTAATGTCACCAGTTTGTGA >Glyma10g25550.2 sequence type=CDS gene model=Glyma10g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCCAAACACAACCGAAACCGAGTGGGGTTCGAAGGCATGGCGGCTTCTCTCCGAGGTCCGTTCCCAATCCCCACTCATTCAATGCATCACCAACTTCGTCTCCATGGACATCGTCGCCAACACCCTCCTCTCCGCCGGCGCCTCCCCCGCCATGCTCCACGCCGCCGAGGAGCTCCCCGACTTCACCCCGCGCGCCGCCGCCCTCGTAGTCAACGTCGGCACGCTCTCCCCCTCCTGGCTCCCCGCCATGAAGGCCGCCGCGCGCCTTTGCATGACTCTCGCCACGCCCTGGGTGCTCGACCCCGTCGCCGCCTCCGCCTCCGCCTTCCGCCTCGACGCCTGCCGCGAACTTCTGAAGCTCAGGCCCACCGTCGTCAGGGGAAACGCCTCCGAGATCATCGCGCTCTCCCAAGCCTCCGCCGCCGCACAGCCACACACCAACGCTGCCTCCAAGGGTGTGGACAGTGTTCACAAGTCAATGGATGCGGTTGAAGCAGCAAAGTTGTTAGCTCGGACAAGTGGTGCAATAGTTGCAGTGTCAGGAGCCACGGACATTGTCACAGATGGAAATCGAGTTGTTGGGGCTCATAATGGGGTGGCGATGATGCAGAAAATAACAGCAACGGGATGTTCAGTCACTGCACTGATTGCTGCCTTTGTTGCCGTTGACAAAAGCCATGCTTTGGATGCCGCAGTGTCTGCATTAGCTGTATTTGGTGTTGCTGGTGAGCTAGGAATGAAGATGGCTAAAGGTCCTGCATCGCTTCGAATGCACTTGATAGATGAACTCTATGGGCTTGATGAATCTGCCTTGAATTCTCATGTTAATGTCACCAGTTTGTGA
>Glyma10g25550.1 sequence type=predicted peptide gene model=Glyma10g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPNTTETEWGSKAWRLLSEVRSQSPLIQCITNFVSMDIVANTLLSAGASPAMLHAAEELPDFTPRAAALVVNVGTLSPSWLPAMKAAARLCMTLATPWVLDPVAASASAFRLDACRELLKLRPTVVRGNASEIIALSQASAAAQPHTNAASKSLHIVKGVDSVHKSMDAVEAAKLLARTSGAIVAVSGATDIVTDGNRVVGAHNGVAMMQKITATGCSVTALIAAFVAVDKSHALDAAVSALAVFGVAGELGMKMAKGPASLRMHLIDELYGLDESALNSHVNVTSL* >Glyma10g25550.2 sequence type=predicted peptide gene model=Glyma10g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPNTTETEWGSKAWRLLSEVRSQSPLIQCITNFVSMDIVANTLLSAGASPAMLHAAEELPDFTPRAAALVVNVGTLSPSWLPAMKAAARLCMTLATPWVLDPVAASASAFRLDACRELLKLRPTVVRGNASEIIALSQASAAAQPHTNAASKGVDSVHKSMDAVEAAKLLARTSGAIVAVSGATDIVTDGNRVVGAHNGVAMMQKITATGCSVTALIAAFVAVDKSHALDAAVSALAVFGVAGELGMKMAKGPASLRMHLIDELYGLDESALNSHVNVTSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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