SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22520 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). | chr3:7974984-7977406 FORWARD LENGTH=600 | SoyBase | E_val: 1.00E-40 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| UniRef100_I1LAK8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LAK8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LJ94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB10263.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LJ94_ARATH | SoyBase | E_val: 5.00E-38 | ISS |
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Glyma10g25510 not represented in the dataset |
Glyma10g25510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g127200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g25510.1 sequence type=CDS gene model=Glyma10g25510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCAACCAGACACTCTCACTATCACTCCCACCAGTTCTAAGGATGAAAGGGAATCCTTGAAGAATGACACTCCAATTGACAACAATGCTTGTAATAATTCTACAGATGAAAGGGAATCCTTGAAGAATGACACTCCAATTGACAACAATGCTTGTAATAATTCTACAGATGAAAGGGAATCCTTGAAGAATGACACTCCAATTGACAACAATGCTTGTAATAATTCTACAGATGAAAGGGAATCCTTGAAGAATGACACTCCAATTGACAACAATGCTTGTAATAATTCTACAGATGAAAGGGAATCCTTGAAGAATGACTCTCCAGTTGACAACAATGCTTTTAATAATTCTACGGATGAAAGGGAATCCTTGAAGAATGACACTCCAATTGACAGCAATGCTTGTAAGGATGTGACAAAGGAGAAAACCTTTGATCTTCAACCAGTGTCACCTTTTTCTTCTGGTGTAGGTTTGCCATATGCACCTGAAGGGTGGCCTAATCCTGGTGATGTATGGGGCTGGAAAGTGGCAAAAAGGATGAACAATTCTGGATATTTTACTGATAGATTCCTTACTCTTCCAAGATCTCTTGAGAAGTCTCGTCGCAAGGCAGAGTTTCGAAGCAAGGCTGATATTAGTAGATATCTTCAATCAAATTATCCTGACATGAAAATTGAAGCATTCTTTGCTTTATTTAGCTGGCAGATTCCCTCAACTCAGCAAACCCCTACAAAAGCTATAGAATCACTAGAGACTGGAGAAGATGCCACAGATGAAATTGGCACCCCAAGAAAGAAGTTAAAACAAGAAACAGGAAGCCTGAGTGTCCCCACTCACAAATCTCTAGCACTATTAACTCTACCATCATCGGAGGCTGGAGAAGATGCGACAGATGAGATTGGCACCCTGGGAAAGAAGTTAAAACGAAAAACACGAAGTGTCGGTCGCCCCCCGAAGAAGTCTTTTGGACTAGTTCAGGGTCGACCCCATTTAACACCTGATCAAGTTGTGAATTTGGATGACTATCTAGATACCTTGGAGGACATGCTTGTTATGCCTGAAATTGAGACTACACCATCGGATCATCTGACTCCTCCTACCGTTTTGGATGATAATGAAATGATTGAGAGCTGCAAGAAGAAGCTTTCTTCCCTTCTTGCTATAGATTTTCCTTCTTTGGTCTCTCGTAGTGATGTTGCAGAAGTTGCAACCCTTGCAGCACATATTCGCGAAGATCCTAGTCTTAGTGTTGATCAACTGTTTAAGTTGAAGTTGGTGGAACAAGTTCCGTTAGCTGGTGAGGCTTTCGTGGAGGCTAAGGAAAACATTGAGGAGGTAAACAATTTTTTAGCTGACCTAGAGGCAAAGAAACTTAAAGTTCCTAGTCTCAAAAAAGAGTACAACGAATTAAAGGACAAAATAGGCCAGCAAGAGGCTGAAATCGACATAAGCACTCTAACTATTCGAGAAATTGATGATCAAATTCGGCAACTTAAAGCGAAACGGAACCGGATAAGTAATGGCCTTGAAACCATGAAGAAGACTAAAGCTGAGCTGACTTCTGAGCTAACAAATGTTGCCAACTCAATTTCAACCATTGGTCATGAGATTAAACATGGATTATCCCAAAAGTCAAAATTGGAGCTGAAGAAAGCAAACAATATCCGGCGTGTAGCCGAGATACAAGAAAAGTTCATCACTTTAAGAGGGTTAACATTTTAG
>Glyma10g25510.1 sequence type=predicted peptide gene model=Glyma10g25510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQPDTLTITPTSSKDERESLKNDTPIDNNACNNSTDERESLKNDTPIDNNACNNSTDERESLKNDTPIDNNACNNSTDERESLKNDTPIDNNACNNSTDERESLKNDSPVDNNAFNNSTDERESLKNDTPIDSNACKDVTKEKTFDLQPVSPFSSGVGLPYAPEGWPNPGDVWGWKVAKRMNNSGYFTDRFLTLPRSLEKSRRKAEFRSKADISRYLQSNYPDMKIEAFFALFSWQIPSTQQTPTKAIESLETGEDATDEIGTPRKKLKQETGSLSVPTHKSLALLTLPSSEAGEDATDEIGTLGKKLKRKTRSVGRPPKKSFGLVQGRPHLTPDQVVNLDDYLDTLEDMLVMPEIETTPSDHLTPPTVLDDNEMIESCKKKLSSLLAIDFPSLVSRSDVAEVATLAAHIREDPSLSVDQLFKLKLVEQVPLAGEAFVEAKENIEEVNNFLADLEAKKLKVPSLKKEYNELKDKIGQQEAEIDISTLTIREIDDQIRQLKAKRNRISNGLETMKKTKAELTSELTNVANSISTIGHEIKHGLSQKSKLELKKANNIRRVAEIQEKFITLRGLTF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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