Glyma10g25500 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g25500

Feature Type:	gene_model
Chromosome:	Gm10
Start:	33416190
stop:	33420705
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g25500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24040	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr3:8681118-8683211 REVERSE LENGTH=417	SoyBase	E_val: 2.00E-166	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG0799	KOG	Branching enzyme	JGI		ISS
PTHR19297	Panther	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	JGI		ISS
PTHR19297:SF2	Panther	GALACTOSYLTRANSFERASE-RELATED	JGI		ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_B9RWP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RWP7_RICCO	SoyBase	E_val: 3.00E-180	ISS
UniRef100_I1LAK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LAK7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g25500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g25500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g127100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g25500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g25500

Limit To All Plant Sequences

>Glyma10g25500.1   sequence type=CDS   gene model=Glyma10g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAACAGCACAGCACCAGCACCCTCCCAGTCCCAGCTGCACTGGCCCTCACTCTCCACCTTCCTCAACCTCAGAGATCCAAAGCCCAAACCCACCCTCCTCCTCTACTCCTTCCTCTTCCTCTCCCTCCTCTCCCTCACCCTCATCCTCTCCCTCTCCTTCACCTCCCCTTCTCCCCACTCCGGCCCGGACCCCTTCCTCCACCCCATCTTCCACACCCACAAACCCTCCACCCCCTCCCCTCCCTCCCTCGCCTACCTCATCTCCGGCTCCCACGGCGACTCTCCCCGGATCCTCCGCCTGCTCCGCGCCACCTACCACCCCCTCAACCTCTACCTCCTCCACCTCGACCCCTCCGCCCCCCACGCCGATCGCGACCACCTCGCCCTCTCCGTCCAGTCCGACCCCGTCTTCAAGGCCGCCCAGAATGTTCACGTTGTCGGGAGGCCCGACTTCGCCTACCACAAAGGCTCCTCCCCTGTCTCGCTCCGCCTCCACGCTGCCGCCATTCTGCTCCGCCTCTCGCAGAACTGGGACTGGTTCGTCAGCCTCGCTGCCGATGCTTACCCTCTTGTTACGCAAGATGATCTTCTCCACATATTGTCGTTTCTGCCTAAGGATATGAACTTTGTGAATCATTCAAGTTATATTGGATGGAAAGAAGCGAAGAAATTGAAACCTATTATTGTTGATCCTGGCCTGTATCTCTCTGAAGGGACTGAAATGTTTTATGCTACACAGAAGAGAGAACTCCCTAGTGCTTACCGTGTTTTTACAGGTTCATCTTTTTCTATCTTAAGCCGCAGTTTCATGGAGTTCTGCATCTTGGGAGAAGACAACCTCCCAAGGATTCTGCTGATGTATTTTGCAAACACACCTTCATCCTTGTCCAACTATTTCCCTACAGTTCTCTGCAACGCTCGACAGTTTAATAGGACAGTCATAAATCAAAACTTATTATATGCTATCCATGACAGCCATAGAAATGATCTTAGACCACTCAATTCCACTGATTTTGATGACATGATTCACAGCGGAGCTGTCTTTGCTCAAAAGTTCCAGAACGATGATCCTGTGCTTGATCTCATTGACCAAAAACTTTTGGGTCGAAGTCCTAGATCAATTGTTCCCGGTGGATGGTGCTTAGGTGAGCCTGGGAACAACACATGTCTAACTTGGGGTGATGCCAAGATCTTGAGACCTGGTACAGGTTCCCAACGGCTTGAGAAGGCCATTGTTGAATTGCTGGCTAATGGCACTTTCCGATCGCGCCAGTGCATATATGAATGA

Predicted protein sequences of Glyma10g25500

Limit To All Plant Sequences

>Glyma10g25500.1   sequence type=predicted peptide   gene model=Glyma10g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNSTAPAPSQSQLHWPSLSTFLNLRDPKPKPTLLLYSFLFLSLLSLTLILSLSFTSPSPHSGPDPFLHPIFHTHKPSTPSPPSLAYLISGSHGDSPRILRLLRATYHPLNLYLLHLDPSAPHADRDHLALSVQSDPVFKAAQNVHVVGRPDFAYHKGSSPVSLRLHAAAILLRLSQNWDWFVSLAADAYPLVTQDDLLHILSFLPKDMNFVNHSSYIGWKEAKKLKPIIVDPGLYLSEGTEMFYATQKRELPSAYRVFTGSSFSILSRSFMEFCILGEDNLPRILLMYFANTPSSLSNYFPTVLCNARQFNRTVINQNLLYAIHDSHRNDLRPLNSTDFDDMIHSGAVFAQKFQNDDPVLDLIDQKLLGRSPRSIVPGGWCLGEPGNNTCLTWGDAKILRPGTGSQRLEKAIVELLANGTFRSRQCIYE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain