Glyma10g25490 - SoyBase

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Report for Sequence Feature Glyma10g25490

Feature Type:	gene_model
Chromosome:	Gm10
Start:	33401631
stop:	33408334
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g25490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13590	AT	Annotation by Michelle Graham. TAIR10: Uncharacterized protein family (UPF0016) \| chr4:7901369-7903792 REVERSE LENGTH=359	SoyBase	E_val: 2.00E-154	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG2881	KOG	Predicted membrane protein	JGI		ISS
PTHR12608	Panther	TRANSMEMBRANE PROTEIN HTP-1 RELATED	JGI		ISS
PF01169	PFAM	Uncharacterized protein family UPF0016	JGI		ISS
UniRef100_B9RWP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein TPARL, putative n=1 Tax=Ricinus communis RepID=B9RWP5_RICCO	SoyBase	E_val: 9.00E-171	ISS
UniRef100_I1LAK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAK5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g25490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g25490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g127000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g25490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g25490

Limit To All Plant Sequences

>Glyma10g25490.2   sequence type=transcript   gene model=Glyma10g25490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTCTCCCTTTGCTTACGTGGCAGCTTCTAGAACTATCTCTTTTCCAGTACCAACCTTAGCCCAACTGGGTAACACAACACAACACTTGTTTTCTTAAAAGTTCAAACTGTCTGAGTTTTGCAGAATCCACGGAGCTAAGAATGAAATTGTAGAAGAAGAAGCACTTTCACAGAAAACATGAAAGGGTTAGGTCCTCATGCCCCTTTGGTTTCAAGGGGAAAGCTTCCTCCTTCGTTGGCAGTAGTGGATGCCTTGCCAACATGCTCTTCTTATTTCTCTAGAACCACCGTCCTATACCCATTAAGATGCAGACAAAAATCAAGGTTGAGCTTGGCCCGTGGCACAATTCGAGCCCAAGCATCCAATATTAGTGGTGTTGAACCTGGAGATTATGGAAGCAATACTGAGAAAGATGGTCAGAATGTATTTGAAGGGAATGTTATCGAAGGCAGTTCTTCTAATGTTGTAAAACCTCCTGATCGGATCCCTTATCCTCTCTCTATAGCTTTTGTGCTGTTGGGATGTGCACTTGTGTTTTCACTAATAGCCTTTGTGAAAGGAGGGCCTTCATCAGTTCTAGCAGCAATTGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAAATTGGAGACAAGGTCCTATTGGGATCAATGGGTGCCCTTGCACTCATGTCAATCCTCTCTGTTGTAATTGGCCGAATCTTTCAATCAGTGCCTGCTCAGTTTCAGACAACCTTGCCAATTGGAGAATATGCAGCAGTAACTCTTCTTTTGTTTTTCGGCCTAAAAGCAATAAAAGACGCTTGGGATCTTCCATCAGATGTGGTTAAGGGTGATAACAGCAGTCCTGAACTTGATGAACTTGCCGAAGCAGAGGAGCTTGTAAAAGAAAAGGTGTCAACACGACTTTCAAATCCACTTGAGATAGTTTGGAAATCATTCAGCCTCGTATTTTTTGCTGAATGGGGAGATCGCTCTATGCTTGCGACAATTGCACTTGGGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACCTACTCGCAACTACTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTGGCCACCTTTTTTGGGGTTTTCTGATTCATTGTTGTCTATCCTTACACCTTTTTTGTGTGCAATATATCACTGATGGAGCTAAAAGGAATAACACATGCTCAAAACAGAAAGATTGTGAGAGAACAGAGAAAAGCTCATATTTTAACTTTGTTAAAAGATTTCTTGAGTAGAAATTAGGAGCAAATTGCTCACATGGTTGGAGAATAAGAAGCATGAAATGTGCCATTAGAGTGAGGTTTGAAGAGAAACTTGTGTAATTCTTTCTCGAGACTAGCTTCTGTAGAGTGTCTTTATTTATTGTATAATCAAACTACATCTAAGATTCAAAGAAACGTGCCTATCAAAAACAATTTGCTGTTGTTAGATTTCCTTGAGGCAGTTTTATATTGCATTGTTCTCTGGTATACTTGAAAAGGGTCTACAATCTGGA

Coding sequences of Glyma10g25490

Limit To All Plant Sequences

>Glyma10g25490.1   sequence type=CDS   gene model=Glyma10g25490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGGTTAGGTCCTCATGCCCCTTTGGTTTCAAGGGGAAAGCTTCCTCCTTCGTTGGCAGTAGTGGATGCCTTGCCAACATGCTCTTCTTATTTCTCTAGAACCACCGTCCTATACCCATTAAGATGCAGACAAAAATCAAGGTTGAGCTTGGCCCGTGGCACAATTCGAGCCCAAGCATCCAATATTAGTGGTGTTGAACCTGGAGATTATGGAAGCAATACTGAGAAAGATGGTCAGAATGTATTTGAAGGGAATGTTATCGAAGGCAGTTCTTCTAATGTTGTAAAACCTCCTGATCGGATCCCTTATCCTCTCTCTATAGCTTTTGTGCTGTTGGGATGTGCACTTGTGTTTTCACTAATAGCCTTTGTGAAAGGAGGGCCTTCATCAGTTCTAGCAGCAATTGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAAATTGGAGACAAGACATTCTTTATTGCTGCACTCTTGGCAATGCAATATGAGAAAGGATTGGTCCTATTGGGATCAATGGGTGCCCTTGCACTCATGTCAATCCTCTCTGTTGTAATTGGCCGAATCTTTCAATCAGTGCCTGCTCAGTTTCAGACAACCTTGCCAATTGGAGAATATGCAGCAGTAACTCTTCTTTTGTTTTTCGGCCTAAAAGCAATAAAAGACGCTTGGGATCTTCCATCAGATGTGGTTAAGGGTGATAACAGCAGTCCTGAACTTGATGAACTTGCCGAAGCAGAGGAGCTTGTAAAAGAAAAGGTGTCAACACGACTTTCAAATCCACTTGAGATAGTTTGGAAATCATTCAGCCTCGTATTTTTTGCTGAATGGGGAGATCGCTCTATGCTTGCGACAATTGCACTTGGGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACCTACTCGCAACTACTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTGGCCACCTTTTTTGGGGTTTTCTGA

>Glyma10g25490.2   sequence type=CDS   gene model=Glyma10g25490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGGTTAGGTCCTCATGCCCCTTTGGTTTCAAGGGGAAAGCTTCCTCCTTCGTTGGCAGTAGTGGATGCCTTGCCAACATGCTCTTCTTATTTCTCTAGAACCACCGTCCTATACCCATTAAGATGCAGACAAAAATCAAGGTTGAGCTTGGCCCGTGGCACAATTCGAGCCCAAGCATCCAATATTAGTGGTGTTGAACCTGGAGATTATGGAAGCAATACTGAGAAAGATGGTCAGAATGTATTTGAAGGGAATGTTATCGAAGGCAGTTCTTCTAATGTTGTAAAACCTCCTGATCGGATCCCTTATCCTCTCTCTATAGCTTTTGTGCTGTTGGGATGTGCACTTGTGTTTTCACTAATAGCCTTTGTGAAAGGAGGGCCTTCATCAGTTCTAGCAGCAATTGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAAATTGGAGACAAGGTCCTATTGGGATCAATGGGTGCCCTTGCACTCATGTCAATCCTCTCTGTTGTAATTGGCCGAATCTTTCAATCAGTGCCTGCTCAGTTTCAGACAACCTTGCCAATTGGAGAATATGCAGCAGTAACTCTTCTTTTGTTTTTCGGCCTAAAAGCAATAAAAGACGCTTGGGATCTTCCATCAGATGTGGTTAAGGGTGATAACAGCAGTCCTGAACTTGATGAACTTGCCGAAGCAGAGGAGCTTGTAAAAGAAAAGGTGTCAACACGACTTTCAAATCCACTTGAGATAGTTTGGAAATCATTCAGCCTCGTATTTTTTGCTGAATGGGGAGATCGCTCTATGCTTGCGACAATTGCACTTGGGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACCTACTCGCAACTACTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTGGCCACCTTTTTTGGGGTTTTCTGA

Predicted protein sequences of Glyma10g25490

Limit To All Plant Sequences

>Glyma10g25490.1   sequence type=predicted peptide   gene model=Glyma10g25490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGLGPHAPLVSRGKLPPSLAVVDALPTCSSYFSRTTVLYPLRCRQKSRLSLARGTIRAQASNISGVEPGDYGSNTEKDGQNVFEGNVIEGSSSNVVKPPDRIPYPLSIAFVLLGCALVFSLIAFVKGGPSSVLAAIAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYEKGLVLLGSMGALALMSILSVVIGRIFQSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSDVVKGDNSSPELDELAEAEELVKEKVSTRLSNPLEIVWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATTIAILGGAFLANYISEKLVGYLGGGLFLIFAVATFFGVF*

>Glyma10g25490.2   sequence type=predicted peptide   gene model=Glyma10g25490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGLGPHAPLVSRGKLPPSLAVVDALPTCSSYFSRTTVLYPLRCRQKSRLSLARGTIRAQASNISGVEPGDYGSNTEKDGQNVFEGNVIEGSSSNVVKPPDRIPYPLSIAFVLLGCALVFSLIAFVKGGPSSVLAAIAKSGFTAAFTLIFVSEIGDKVLLGSMGALALMSILSVVIGRIFQSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSDVVKGDNSSPELDELAEAEELVKEKVSTRLSNPLEIVWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATTIAILGGAFLANYISEKLVGYLGGGLFLIFAVATFFGVF*

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