SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13590 | AT | Annotation by Michelle Graham. TAIR10: Uncharacterized protein family (UPF0016) | chr4:7901369-7903792 REVERSE LENGTH=359 | SoyBase | E_val: 2.00E-154 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG2881 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR12608 | Panther | TRANSMEMBRANE PROTEIN HTP-1 RELATED | JGI | ISS | |
| PF01169 | PFAM | Uncharacterized protein family UPF0016 | JGI | ISS | |
| UniRef100_B9RWP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein TPARL, putative n=1 Tax=Ricinus communis RepID=B9RWP5_RICCO | SoyBase | E_val: 9.00E-171 | ISS |
| UniRef100_I1LAK5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAK5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g25490 not represented in the dataset |
Glyma10g25490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g127000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g25490.2 sequence type=transcript gene model=Glyma10g25490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTTCTCCCTTTGCTTACGTGGCAGCTTCTAGAACTATCTCTTTTCCAGTACCAACCTTAGCCCAACTGGGTAACACAACACAACACTTGTTTTCTTAAAAGTTCAAACTGTCTGAGTTTTGCAGAATCCACGGAGCTAAGAATGAAATTGTAGAAGAAGAAGCACTTTCACAGAAAACATGAAAGGGTTAGGTCCTCATGCCCCTTTGGTTTCAAGGGGAAAGCTTCCTCCTTCGTTGGCAGTAGTGGATGCCTTGCCAACATGCTCTTCTTATTTCTCTAGAACCACCGTCCTATACCCATTAAGATGCAGACAAAAATCAAGGTTGAGCTTGGCCCGTGGCACAATTCGAGCCCAAGCATCCAATATTAGTGGTGTTGAACCTGGAGATTATGGAAGCAATACTGAGAAAGATGGTCAGAATGTATTTGAAGGGAATGTTATCGAAGGCAGTTCTTCTAATGTTGTAAAACCTCCTGATCGGATCCCTTATCCTCTCTCTATAGCTTTTGTGCTGTTGGGATGTGCACTTGTGTTTTCACTAATAGCCTTTGTGAAAGGAGGGCCTTCATCAGTTCTAGCAGCAATTGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAAATTGGAGACAAGGTCCTATTGGGATCAATGGGTGCCCTTGCACTCATGTCAATCCTCTCTGTTGTAATTGGCCGAATCTTTCAATCAGTGCCTGCTCAGTTTCAGACAACCTTGCCAATTGGAGAATATGCAGCAGTAACTCTTCTTTTGTTTTTCGGCCTAAAAGCAATAAAAGACGCTTGGGATCTTCCATCAGATGTGGTTAAGGGTGATAACAGCAGTCCTGAACTTGATGAACTTGCCGAAGCAGAGGAGCTTGTAAAAGAAAAGGTGTCAACACGACTTTCAAATCCACTTGAGATAGTTTGGAAATCATTCAGCCTCGTATTTTTTGCTGAATGGGGAGATCGCTCTATGCTTGCGACAATTGCACTTGGGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACCTACTCGCAACTACTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTGGCCACCTTTTTTGGGGTTTTCTGATTCATTGTTGTCTATCCTTACACCTTTTTTGTGTGCAATATATCACTGATGGAGCTAAAAGGAATAACACATGCTCAAAACAGAAAGATTGTGAGAGAACAGAGAAAAGCTCATATTTTAACTTTGTTAAAAGATTTCTTGAGTAGAAATTAGGAGCAAATTGCTCACATGGTTGGAGAATAAGAAGCATGAAATGTGCCATTAGAGTGAGGTTTGAAGAGAAACTTGTGTAATTCTTTCTCGAGACTAGCTTCTGTAGAGTGTCTTTATTTATTGTATAATCAAACTACATCTAAGATTCAAAGAAACGTGCCTATCAAAAACAATTTGCTGTTGTTAGATTTCCTTGAGGCAGTTTTATATTGCATTGTTCTCTGGTATACTTGAAAAGGGTCTACAATCTGGA
>Glyma10g25490.1 sequence type=CDS gene model=Glyma10g25490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGGTTAGGTCCTCATGCCCCTTTGGTTTCAAGGGGAAAGCTTCCTCCTTCGTTGGCAGTAGTGGATGCCTTGCCAACATGCTCTTCTTATTTCTCTAGAACCACCGTCCTATACCCATTAAGATGCAGACAAAAATCAAGGTTGAGCTTGGCCCGTGGCACAATTCGAGCCCAAGCATCCAATATTAGTGGTGTTGAACCTGGAGATTATGGAAGCAATACTGAGAAAGATGGTCAGAATGTATTTGAAGGGAATGTTATCGAAGGCAGTTCTTCTAATGTTGTAAAACCTCCTGATCGGATCCCTTATCCTCTCTCTATAGCTTTTGTGCTGTTGGGATGTGCACTTGTGTTTTCACTAATAGCCTTTGTGAAAGGAGGGCCTTCATCAGTTCTAGCAGCAATTGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAAATTGGAGACAAGACATTCTTTATTGCTGCACTCTTGGCAATGCAATATGAGAAAGGATTGGTCCTATTGGGATCAATGGGTGCCCTTGCACTCATGTCAATCCTCTCTGTTGTAATTGGCCGAATCTTTCAATCAGTGCCTGCTCAGTTTCAGACAACCTTGCCAATTGGAGAATATGCAGCAGTAACTCTTCTTTTGTTTTTCGGCCTAAAAGCAATAAAAGACGCTTGGGATCTTCCATCAGATGTGGTTAAGGGTGATAACAGCAGTCCTGAACTTGATGAACTTGCCGAAGCAGAGGAGCTTGTAAAAGAAAAGGTGTCAACACGACTTTCAAATCCACTTGAGATAGTTTGGAAATCATTCAGCCTCGTATTTTTTGCTGAATGGGGAGATCGCTCTATGCTTGCGACAATTGCACTTGGGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACCTACTCGCAACTACTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTGGCCACCTTTTTTGGGGTTTTCTGA >Glyma10g25490.2 sequence type=CDS gene model=Glyma10g25490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGGTTAGGTCCTCATGCCCCTTTGGTTTCAAGGGGAAAGCTTCCTCCTTCGTTGGCAGTAGTGGATGCCTTGCCAACATGCTCTTCTTATTTCTCTAGAACCACCGTCCTATACCCATTAAGATGCAGACAAAAATCAAGGTTGAGCTTGGCCCGTGGCACAATTCGAGCCCAAGCATCCAATATTAGTGGTGTTGAACCTGGAGATTATGGAAGCAATACTGAGAAAGATGGTCAGAATGTATTTGAAGGGAATGTTATCGAAGGCAGTTCTTCTAATGTTGTAAAACCTCCTGATCGGATCCCTTATCCTCTCTCTATAGCTTTTGTGCTGTTGGGATGTGCACTTGTGTTTTCACTAATAGCCTTTGTGAAAGGAGGGCCTTCATCAGTTCTAGCAGCAATTGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAAATTGGAGACAAGGTCCTATTGGGATCAATGGGTGCCCTTGCACTCATGTCAATCCTCTCTGTTGTAATTGGCCGAATCTTTCAATCAGTGCCTGCTCAGTTTCAGACAACCTTGCCAATTGGAGAATATGCAGCAGTAACTCTTCTTTTGTTTTTCGGCCTAAAAGCAATAAAAGACGCTTGGGATCTTCCATCAGATGTGGTTAAGGGTGATAACAGCAGTCCTGAACTTGATGAACTTGCCGAAGCAGAGGAGCTTGTAAAAGAAAAGGTGTCAACACGACTTTCAAATCCACTTGAGATAGTTTGGAAATCATTCAGCCTCGTATTTTTTGCTGAATGGGGAGATCGCTCTATGCTTGCGACAATTGCACTTGGGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACCTACTCGCAACTACTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTGGCCACCTTTTTTGGGGTTTTCTGA
>Glyma10g25490.1 sequence type=predicted peptide gene model=Glyma10g25490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGLGPHAPLVSRGKLPPSLAVVDALPTCSSYFSRTTVLYPLRCRQKSRLSLARGTIRAQASNISGVEPGDYGSNTEKDGQNVFEGNVIEGSSSNVVKPPDRIPYPLSIAFVLLGCALVFSLIAFVKGGPSSVLAAIAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYEKGLVLLGSMGALALMSILSVVIGRIFQSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSDVVKGDNSSPELDELAEAEELVKEKVSTRLSNPLEIVWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATTIAILGGAFLANYISEKLVGYLGGGLFLIFAVATFFGVF* >Glyma10g25490.2 sequence type=predicted peptide gene model=Glyma10g25490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGLGPHAPLVSRGKLPPSLAVVDALPTCSSYFSRTTVLYPLRCRQKSRLSLARGTIRAQASNISGVEPGDYGSNTEKDGQNVFEGNVIEGSSSNVVKPPDRIPYPLSIAFVLLGCALVFSLIAFVKGGPSSVLAAIAKSGFTAAFTLIFVSEIGDKVLLGSMGALALMSILSVVIGRIFQSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSDVVKGDNSSPELDELAEAEELVKEKVSTRLSNPLEIVWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATTIAILGGAFLANYISEKLVGYLGGGLFLIFAVATFFGVF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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