Glyma10g25480 - SoyBase

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Report for Sequence Feature Glyma10g25480

Feature Type:	gene_model
Chromosome:	Gm10
Start:	33374598
stop:	33378291
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g25480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24050	AT	Annotation by Michelle Graham. TAIR10: GATA transcription factor 1 \| chr3:8686060-8687462 FORWARD LENGTH=274	SoyBase	E_val: 3.00E-49	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0044212	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding	SoyBase	N/A	ISS
PTHR10071	Panther	TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)	JGI		ISS
PTHR10071:SF113	Panther	ZINC FINGER (GATA TYPE) FAMILY PROTEIN	JGI		ISS
PF00320	PFAM	GATA zinc finger	JGI		ISS
UniRef100_G7K6G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7K6G0_MEDTR	SoyBase	E_val: 9.00E-85	ISS
UniRef100_I1LAK4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAK4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g25480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g25480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g126900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g25480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g25480

Limit To All Plant Sequences

>Glyma10g25480.1   sequence type=CDS   gene model=Glyma10g25480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCATTGGTTCTGTGGATGACCTCTTGGATTTTTCATCAGACATAGGCGAGGAAGATGATTACGATGACAAACCTAGGAAAGCCTGTCCTTCACTTAACTCAAAATGCGCCGGCCCATCGTTGTTTAACCCATTGGTCCAGGTTGATCCAAACCATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTTCTGTTGAAACGTTTGTCGACCTATCATCTATTCAACCCGGCACAACCAAGAACCAAAAATCAGCCCCAGTACTTGAGTGTAGCACAGGCAGTAGCAACAGTAATAACAGCACTAACAGTATTTCCCTCCTAAACAGCTGTGATCACCTGAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCATCGCCCTGGCCTTGCTGAGAATTCTAGTCAGCAAGTCTGGTGGAGACAGCCAAGTAATGGAACTTCCAAAGCAGATGAAGGGATGAAAATCTCATCCATCGGTAGAAAATGTCAGCACTGTGGAGCTGAAAAAACTCCACAATGGCGGGCAGGTCCCTCTGGTCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTCAAGTCTGGGCGGCTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTTTCATAGTGATTTGCATTCTAATTCCCACAGGAAGATAGTAGAGATGAGGAGGCAGAAGCAAATGGGAATGGGATAA

Predicted protein sequences of Glyma10g25480

Limit To All Plant Sequences

>Glyma10g25480.1   sequence type=predicted peptide   gene model=Glyma10g25480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METIGSVDDLLDFSSDIGEEDDYDDKPRKACPSLNSKCAGPSLFNPLVQVDPNHSFSEFAEEELEWLSNKDAFPSVETFVDLSSIQPGTTKNQKSAPVLECSTGSSNSNNSTNSISLLNSCDHLKVPVRARSKSRSRHRPGLAENSSQQVWWRQPSNGTSKADEGMKISSIGRKCQHCGAEKTPQWRAGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFHSDLHSNSHRKIVEMRRQKQMGMG*

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