Glyma10g25340 - SoyBase

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Report for Sequence Feature Glyma10g25340

Feature Type:	gene_model
Chromosome:	Gm10
Start:	33037397
stop:	33040462
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g25340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42340	AT	Annotation by Michelle Graham. TAIR10: Plant U-Box 15 \| chr5:16928086-16930367 REVERSE LENGTH=660	SoyBase	E_val: 4.00E-168	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF7	Panther	UNCHARACTERIZED	JGI		ISS
PF05804	PFAM	Kinesin-associated protein (KAP)	JGI		ISS
UniRef100_A2Q4E9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U box n=1 Tax=Medicago truncatula RepID=A2Q4E9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N3T8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3T8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g25340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g25340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g126300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g25340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g25340

Limit To All Plant Sequences

>Glyma10g25340.2   sequence type=CDS   gene model=Glyma10g25340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGAGAGAGACGTGTCATCGTATGAGTTGTCAGAGGAGAAATATGACCCACTAGAGGAGATCCATCGAGTCATCCAATCGGTAGTTCAATTCGACGAATACCGGAGGACACAGAGGAAGGAGAGCCACAACCTCGTGCGCCGTTTCAAGTTCATGTTGCTGCTCTGGGAAGAGCTTCATGACCTCCTACAACCTTTCCTAGAAATCGGTGTGACTTGGTTAACCAAAGTCAAGGATGTGCTTTTGTTCACCAAGGATTTGTTGAAACTATGTAGCCAAGGAAGCAAGATCCACCTCGCTTTGGAGACCGAGGTAGTTATGATCACGTTTCAGAAAGTGTATGACAAATTAAGCCAAGCATTTGGTGATGTGCCTTGTGATGAAATAGGTATCTTAGATGAAGTCAAGGAACAAGACACGGAACTTGCAATGGATATGATGGTTGTGTTTTCTGACAATGATGACAGAAATGCTGATAGTGCTATCATTGAGAGGCTGGCTAAAAAGCTAGAGCTTTATAGTGTTGAGAGTACTCAGAAAATAATTTACCTTTTTAACAAATTCAAACGAATTGCAAGCATGGAAGAAACCGGCATCCTTGATGATCTTGTCATGCCCAAGATGCTTGAGAGGTGCACCTCTTTGGTCATCCCTCATGAGTTTCTCTACCCAATTACACTAGAAATCATGACAGATCTTGTCATTATAACAAGTGGGCAGATTGAAGAATGGTGTGAGAACAACAACTTCAAACTTCCTAAAAAATACAATTCTTTAGGTCAAGAAACTTTGGTTGAGAGCCTATCATCTATTCATTTAGAAGAGCAGAGACAAGCAGTGGAGAAGATATGTATGCTATCAAAGGAAAATCCTGAGAACAGGGTTTTGGTTGCTGAACATGGAGGAATGCCATCACTAGTGAAACTCTTGTCCTATCTATATTCAAAAATACAAGAACATGTAGTGAAAACACTTTTGAATTTATCAATTGATGAGGGTAACAAGTGTCTTATATCCACAGAAGGTGTCATTCCAGCTATCATAGAAGTTTTGGAGAATGGTAGTTGTGTGGTTAAGGAGAACTCAGCCGTAGCTTTATTCAGCTTGTTAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGTTCCCACCTTTGGTGGATATGTTGAGGAATGGAACAATTAGAGGGAAGAAAGATGTTGTGACAACTCTTTTTAACTTATCTATCAACCATGCAAATAAAAGTAGGGCCATTCGAGCTGGCATTGTGAATCCCTTGCTTCAATTGCTCAAGGACACAAACTTGGGCATGATTGATGAGGCTTTCTTTGTTTTTTTCATTGAAACCCTTGTTGAGTTCATGAAAGAAGGGAGTCCAGAGAACAAGGAATGTGTTGCATCTGTTCTTCTTGAGTTGTGCTCAAGTAACTCATCCTTTACATTGACAGCACTTCATTTTGAAGTGTATGAGTATTTAATGGAGATAAAACAAAATGGAACAAATAAAGCACAGAGGAAAGCAAATGCAGTGCTAGATCTCATTAGTAGGAGTGAGCAAATTTAA

Predicted protein sequences of Glyma10g25340

Limit To All Plant Sequences

>Glyma10g25340.2   sequence type=predicted peptide   gene model=Glyma10g25340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEERDVSSYELSEEKYDPLEEIHRVIQSVVQFDEYRRTQRKESHNLVRRFKFMLLLWEELHDLLQPFLEIGVTWLTKVKDVLLFTKDLLKLCSQGSKIHLALETEVVMITFQKVYDKLSQAFGDVPCDEIGILDEVKEQDTELAMDMMVVFSDNDDRNADSAIIERLAKKLELYSVESTQKIIYLFNKFKRIASMEETGILDDLVMPKMLERCTSLVIPHEFLYPITLEIMTDLVIITSGQIEEWCENNNFKLPKKYNSLGQETLVESLSSIHLEEQRQAVEKICMLSKENPENRVLVAEHGGMPSLVKLLSYLYSKIQEHVVKTLLNLSIDEGNKCLISTEGVIPAIIEVLENGSCVVKENSAVALFSLLMLDEIKEIVGQSNGFPPLVDMLRNGTIRGKKDVVTTLFNLSINHANKSRAIRAGIVNPLLQLLKDTNLGMIDEAFFVFFIETLVEFMKEGSPENKECVASVLLELCSSNSSFTLTALHFEVYEYLMEIKQNGTNKAQRKANAVLDLISRSEQI*

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