|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G68010 | AT | Annotation by Michelle Graham. TAIR10: hydroxypyruvate reductase | chr1:25493418-25495720 FORWARD LENGTH=386 | SoyBase | E_val: 1.00E-64 | ISS |
GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
GO:0009773 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I | SoyBase | N/A | ISS |
GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
GO:0009854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidative photosynthetic carbon pathway | SoyBase | N/A | ISS |
GO:0010114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red light | SoyBase | N/A | ISS |
GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
GO:0010304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process | SoyBase | N/A | ISS |
GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
GO:0071482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to light stimulus | SoyBase | N/A | ISS |
GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
GO:0008266 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding | SoyBase | N/A | ISS |
GO:0008465 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycerate dehydrogenase activity | SoyBase | N/A | ISS |
PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE | JGI | ISS | |
PTHR10996:SF22 | Panther | ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE | JGI | ISS | |
PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | ISS | |
UniRef100_B0M1A3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal hydroxypyruvate reductase n=1 Tax=Glycine max RepID=B0M1A3_SOYBN | SoyBase | E_val: 5.00E-70 | ISS |
UniRef100_UPI000233C7AC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C7AC related cluster n=1 Tax=unknown RepID=UPI000233C7AC | SoyBase | E_val: 2.00E-81 | ISS |
Glyma10g24682 not represented in the dataset |
Glyma10g24682 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g24682.1 sequence type=CDS gene model=Glyma10g24682 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAAGGAAGCAATTCTTATAAACTGCAGCAGAGGACCTGTTATTGATGAAGCTGCACTTGTGGAGCATTTAAAACAGAACCCGATGTTTCGAGTAGGCCTTGATGTGTTTGAGGAAGAGCCCTACATGAAATCCAGGCTTACAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAACTGGACTCATGAGGGAATGGCTACACTAGCAGCTCTAAACGTGTTAGGGAAGATCAAAGGGTACCCAGTTTGGTTTGATGCCAATAGGGTGGAAGCATTCCTCAAAGAGAATGCTCGACCACCAGCTACATGCCCAAGCATTGTTAATGCAAAAGCCCTAGGTAATAACATTTTATACACTTGA
>Glyma10g24682.1 sequence type=predicted peptide gene model=Glyma10g24682 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKEAILINCSRGPVIDEAALVEHLKQNPMFRVGLDVFEEEPYMKSRLTELKNAIVVPHIASASNWTHEGMATLAALNVLGKIKGYPVWFDANRVEAFLKENARPPATCPSIVNAKALGNNILYT*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||