SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13720 | AT | Annotation by Michelle Graham. TAIR10: Inosine triphosphate pyrophosphatase family protein | chr4:7967166-7968894 REVERSE LENGTH=206 | SoyBase | E_val: 2.00E-116 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016462 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyrophosphatase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG3222 | KOG | Inosine triphosphate pyrophosphatase | JGI | ISS | |
| PTHR11067 | Panther | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN | JGI | ISS | |
| PF01725 | PFAM | Ham1 family | JGI | ISS | |
| UniRef100_B7FMR3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inosine triphosphate pyrophosphatase n=1 Tax=Medicago truncatula RepID=B7FMR3_MEDTR | SoyBase | E_val: 1.00E-125 | ISS |
| UniRef100_I1LAJ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAJ6_SOYBN | SoyBase | E_val: 3.00E-144 | ISS |
|
Glyma10g24656 not represented in the dataset |
Glyma10g24656 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g19210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g24656.1 sequence type=CDS gene model=Glyma10g24656 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAAATGGGTTAAAAACAAACATGCTCATGTATTGTGCGAGTTGCGACTTATACGGGAGGCTTGCGAGTCCAAATCCAAATGCCTAACTCTAATTGTGACTAAAGCAGGAATGACAACTAGGTATGACAAAGTTTATCTGGACCCTACGAGTACCTGTAAAAATATCTGCAAGTGGGGTACAAGGGGCGGGTACTTATCTGCAAATTTACACGAGTATGGGCACAAGTCGGAGAGAGAGAAACTCACATTAGATAAGAAAAGGTTACAAAAAATCAAACAAGTTCACATTTGCACATCACACAGCAGTCAGCACAGTGCCGCCGCCGTAGTGGGAAGCCATCGTCGACTCGGCGAAAAGTCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGAAGCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTAAAATCTCATTTTGCTGAAGCTGGATATACTTTTGACATCAAGAACGTCTGA
>Glyma10g24656.1 sequence type=predicted peptide gene model=Glyma10g24656 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFKWVKNKHAHVLCELRLIREACESKSKCLTLIVTKAGMTTRYDKVYLDPTSTCKNICKWGTRGGYLSANLHEYGHKSEREKLTLDKKRLQKIKQVHICTSHSSQHSAAAVVGSHRRLGEKSYKIWEMAAARGLVLSRPVTFVTGNAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARMAAVQVNGPVLVEDTCLCFNALKGLPGSKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGSNSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEAGYTFDIKNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
