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Report for Sequence Feature Glyma10g24620

Feature Type:gene_model
Chromosome:Gm10
Start:32175214
stop:32180647
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g24620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04690AT Annotation by Michelle Graham. TAIR10: potassium channel beta subunit 1 | chr1:1313662-1315420 FORWARD LENGTH=328 SoyBaseE_val: 0ISS
GO:0006813GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005267GO-mf Annotation by Michelle Graham. GO Molecular Function: potassium channel activity SoyBaseN/AISS
KOG1575 KOG Voltage-gated shaker-like K+ channel, subunit beta/KCNAB JGI ISS
PTHR11732Panther ALDO/KETO REDUCTASE JGI ISS
PTHR11732:SF14Panther DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED JGI ISS
PF00248PFAM Aldo/keto reductase family JGI ISS
UniRef100_B9RWM3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel beta, putative n=1 Tax=Ricinus communis RepID=B9RWM3_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LAJ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAJ3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g24620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g24620
ParalogEvidenceComments
Glyma20g19000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g24620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g124800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g24620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g24620
>Glyma10g24620.1   sequence type=CDS   gene model=Glyma10g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTACAAGAACCTGGGCCGATCGGGACTGAAGGTGAGCCAGCTCTCCTACGGGGCGTGGGTGAGCTTCGGTAACCAGCTAGACGTGAAGGAGGCCAAGGCCCTCCTCCAGTGCTGCCGCGACCACGGCGTGAACTTCTTCGACAACGCCGAGGTCTACGCCAACGGCCGCGCCGAGGAAATCATGGGCCAGGCCATCCGGGAGCTGGGCTGGAAGCGCTCCGACATTGTCGTTTCCACCAAGATATTTTGGGGTGGACAGGGGCCCAACGACAAGGGGCTCTCCCGCAAGCACGTCGTTGAGGGAACCAAGGCCTCCTTGAAACGCCTCGACATGGAATACGTGGATGTTCTCTACTGTCACCGCCCGGATTCCTCTACTCCCATAGAGGAAACCGTGAGGGCCATGAACCATGTTATTGATAGGGGCTGGGCCTTCTACTGGGGCACTAGCGAGTGGTCGGCTCAGCAGATCACCGAGGCGTGGGCTGTGGCTCAGAGATTGGACCTTGTTGGGCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGGTTGAGTCGGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACTACATGGAGTCCTCTTGCCTCTGGAGTGCTCACTGGGAAATATAAGAAAGGAGTTATACCACCAGATAGCAGATTCGCTTTGGAAAATTACAAAAATCTGGCGTCGAGGTCGCTGGTTGATGATGTGCTTAAGAAGGTTGATGGATTGAAGCCAATTGCGGAAGAGCTTGGTGTGCCGTTGTCTCAGCTTGCAATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTATTGACTCCTGTTGTGATGGAGAAGATTGAGGCTGTTGTTCAAAGCAAGCCAAAACGCCCTGAATCGTACCGATGA
Predicted protein sequences of Glyma10g24620
>Glyma10g24620.1   sequence type=predicted peptide   gene model=Glyma10g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQYKNLGRSGLKVSQLSYGAWVSFGNQLDVKEAKALLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHVVEGTKASLKRLDMEYVDVLYCHRPDSSTPIEETVRAMNHVIDRGWAFYWGTSEWSAQQITEAWAVAQRLDLVGPIVEQPEYNLLSRHKVESEFLPLYTNYGTGLTTWSPLASGVLTGKYKKGVIPPDSRFALENYKNLASRSLVDDVLKKVDGLKPIAEELGVPLSQLAIAWCAANPNVSSVICGATKESQIQENMKAIDVIPLLTPVVMEKIEAVVQSKPKRPESYR*






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