Glyma10g24581 - SoyBase

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Report for Sequence Feature Glyma10g24581

Feature Type:	gene_model
Chromosome:	Gm10
Start:	32085582
stop:	32093972
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g24581

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04790	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:1345469-1348143 FORWARD LENGTH=634	SoyBase	E_val: 2.00E-60	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22766	Panther	RING FINGER PROTEIN 24-RELATED	JGI		ISS
PTHR22766:SF25	Panther	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_D7KE78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KE78_ARALL	SoyBase	E_val: 8.00E-56	ISS
UniRef100_UPI000233C7A7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C7A7 related cluster n=1 Tax=unknown RepID=UPI000233C7A7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g24581

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g24581 not represented in the dataset	Glyma10g24581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g24581

Paralog	Evidence	Comments
Glyma20g18933	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g24581 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g124600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g24581

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g24581

Limit To All Plant Sequences

>Glyma10g24581.2   sequence type=transcript   gene model=Glyma10g24581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTGCTTCGATCCATCTCCGAATTCGGATCGACCCGACCCGATTCTCGAACTGATAAATTCTCGTCCATTCTCGCTCTCTGTTCATCTCTCTCTTTCAATTCACAATCCCTCTTCAGGTTTCGTTATTTTTTGGATTCTTCGCCTGATTTTGTGTCATATAAATCGTGTTACTACAGTGAAGATATGACAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAACAACTGTAAGGCACGATTATCAGAAATATTTAGGTAATCCTGATAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAATAATAACCACAGTAACTATATATCATTGTCCCCGTCAGAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAATGAACAAATCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAGCACTAAAAGCAACTAATGGAAGGTCTTCGTTACCTGTCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTCATTGGAAAGTATAAACTAGATATTAAAACACTTCCAGGTCCTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATTACAAAATGAAAAGCAAGTATCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGGAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTGGCTGAACAGAGCAACCACAAAACCAAAGATGTTGAACAGAGTCATGGTCATTCAGTTTCTAGCAGTACAGTGTCACCGGTTAGTGTTGATGACATAGTTGCTGGAGAGAGAGGCAATGGTAGAGGGAAAGGAAAGGAAGTACTTGCTTATCGTTCACCACATAGGCTGACTTTTCGTACTGCTAGCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCTAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGGCAAGGTGGTCGGAGAACTACACATAATGAGAGGAATGCTAATTGGCACTTGCATGATGTAAATGGGCATCATTTGAGGATAAATAATGATGTTGGAAGATTTATCAATGGACACAATACAACCGGAATGGACAGAAGAAACACTGGGAATGGTCAAAGCAGCAATCATATACATGGTTCTCAGTCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCATCGTACTGCTGACATTTTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGGTTTATGTTCCGTGGTTCAACTGGGGATTCATCAAGCTCATCCCGGAACCCTGTCTCGGATCCTGAAGTGATTGAGTTGTTATCCCCACCAAGGGGTTCATCAAGCTCATCCCGGACTTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAATAGCTCGGAAGCTCGGGCAAGGCAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCACGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTATGCGTGCAACTATTGATAGCCACAGCATAAGTCAACCGAGACAGCTTCCAAGGGCAATCAGACAGCCTCGTACACGGTTTCCAGAAAATCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGAGCACCTAGCACATCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAGTAGGGGATTTCAGTGATATGGGAATTACTGATGGCATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTTCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGACTCCAGTCCAAGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAATTCATTTTGGAATTTTAGTGGTTAATGGTGCTGTAGTTTGTTATCTCAGCCACCTCATTTTGTCTTTCAAAGTAAAAAGCAAAAAAGTTGAAATTGTAATAGGCATGCTACTCTGTTCTGTTCAATCCTTTGATACATTAGATATTTGAAAGTGAATATAAAGGTATAGAAAAATCTGCAACTTGTTAACTTTCAATGTGCTGATATGCTGTTACTGTTGTCTTTTGAATTATGATTAGTTCTGCGACATGAATGATGCACGTTGAGAAAACTGCTCTGAATCACGGTGTCGTAATTGAACTTCTACTGTTGGTGCTAATGAAGAGTCTGCAAAGCAGAGACAACTCTGAAGGCCGTATTATTTCTTAAGATAGAGATATGACCATTTAGGAATCCTAATGTTGAAATGTAACCAATAACATTGTAATTTTATTTTAATTGTTATTTATTTTAAAACTACCAATTTTTAAAACTTAGTTCTTATTAATCTTCAT

Coding sequences of Glyma10g24581

Limit To All Plant Sequences

>Glyma10g24581.1   sequence type=CDS   gene model=Glyma10g24581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAACAACTGTAAGGCACGATTATCAGAAATATTTAGGTAATCCTGATAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAATAATAACCACAGTAACTATATATCATTGTCCCCGTCAGAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAATGAACAAATCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAGCACTAAAAGCAACTAATGGAAGGTCTTCGTTACCTGTCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTCATTGGAAAGTATAAACTAGATATTAAAACACTTCCAGGTCCTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATTACAAAATGAAAAGCAAGTATCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGGAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTGGCTGAACAGAGCAACCACAAAACCAAAGATGTTGAACAGAGTCATGGTCATTCAGTTTCTAGCAGTACAGTGTCACCGGTTAGTGTTGATGACATAGTTGCTGGAGAGAGAGGCAATGGTAGAGGGAAAGGAAAGGAAGTACTTGCTTATCGTTCACCACATAGGCTGACTTTTCGTACTGCTAGCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCTAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGGCAAGGTGGTCGGAGAACTACACATAATGAGAGGAATGCTAATTGGCACTTGCATGATGTAAATGGGCATCATTTGAGGATAAATAATGATGTTGGAAGATTTATCAATGGACACAATACAACCGGAATGGACAGAAGAAACACTGGGAATGGTCAAAGCAGCAATCATATACATGGTTCTCAGTCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCATCGTACTGCTGACATTTTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGGTTTATGTTCCGTGGTTCAACTGGGGATTCATCAAGCTCATCCCGGAACCCTGTCTCGGATCCTGAAGTGATTGAGTTGTTATCCCCACCAAGGGGTTCATCAAGCTCATCCCGGACTTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAATAGCTCGGAAGCTCGGGCAAGGCAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCACGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTATGCGTGCAACTATTGATAGCCACAGCATAAGTCAACCGAGACAGCTTCCAAGGGCAATCAGACAGCCTCGTACACGGTTTCCAGAAAATCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGAGCACCTAGCACATCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAGTAGGGGATTTCAGTGATATGGGAATTACTGATGGCATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTTCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGACTCCAGTCCAAGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA

>Glyma10g24581.2   sequence type=CDS   gene model=Glyma10g24581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAACAACTGTAAGGCACGATTATCAGAAATATTTAGGTAATCCTGATAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAATAATAACCACAGTAACTATATATCATTGTCCCCGTCAGAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAATGAACAAATCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAGCACTAAAAGCAACTAATGGAAGGTCTTCGTTACCTGTCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTCATTGGAAAGTATAAACTAGATATTAAAACACTTCCAGGTCCTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATTACAAAATGAAAAGCAAGTATCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGGAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTGGCTGAACAGAGCAACCACAAAACCAAAGATGTTGAACAGAGTCATGGTCATTCAGTTTCTAGCAGTACAGTGTCACCGGTTAGTGTTGATGACATAGTTGCTGGAGAGAGAGGCAATGGTAGAGGGAAAGGAAAGGAAGTACTTGCTTATCGTTCACCACATAGGCTGACTTTTCGTACTGCTAGCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCTAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGGCAAGGTGGTCGGAGAACTACACATAATGAGAGGAATGCTAATTGGCACTTGCATGATGTAAATGGGCATCATTTGAGGATAAATAATGATGTTGGAAGATTTATCAATGGACACAATACAACCGGAATGGACAGAAGAAACACTGGGAATGGTCAAAGCAGCAATCATATACATGGTTCTCAGTCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCATCGTACTGCTGACATTTTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGGTTTATGTTCCGTGGTTCAACTGGGGATTCATCAAGCTCATCCCGGAACCCTGTCTCGGATCCTGAAGTGATTGAGTTGTTATCCCCACCAAGGGGTTCATCAAGCTCATCCCGGACTTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAATAGCTCGGAAGCTCGGGCAAGGCAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCACGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTATGCGTGCAACTATTGATAGCCACAGCATAAGTCAACCGAGACAGCTTCCAAGGGCAATCAGACAGCCTCGTACACGGTTTCCAGAAAATCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGAGCACCTAGCACATCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAGTAGGGGATTTCAGTGATATGGGAATTACTGATGGCATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTTCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGACTCCAGTCCAAGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA

Predicted protein sequences of Glyma10g24581

Limit To All Plant Sequences

>Glyma10g24581.1   sequence type=predicted peptide   gene model=Glyma10g24581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEDMKIDHIVEVPDTPDRTTVRHDYQKYLGNPDKRGRAFNAADENNNHSNYISLSPSEESYSSQNAPIFRRAQTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEENEQIRHPKPAFSHRGSRDNATEDKKALKATNGRSSLPVISDSSNTSRNAFIGKYKLDIKTLPGPNISVDHGKGISLSNDSQLQNEKQVSLPPRVSTSPRGRGHKRLVRNGCISPHNIATMEKQLAEQSNHKTKDVEQSHGHSVSSSTVSPVSVDDIVAGERGNGRGKGKEVLAYRSPHRLTFRTASSPVTNYEEINGPSNAIRNPLQYSGGQGGRRTTHNERNANWHLHDVNGHHLRINNDVGRFINGHNTTGMDRRNTGNGQSSNHIHGSQSDHTAQPTSVIIPDVDQSSGTHRTADILTKRQRKRESPSGFMFRGSTGDSSSSSRNPVSDPEVIELLSPPRGSSSSSRTSVLDHEVVDLLSTPRYANRSSEDLDDNDNNSSEARARQVEADERLARELQEQLYHDDPFEGRGIDEDLAWDLQRAEALMRATIDSHSISQPRQLPRAIRQPRTRFPENPSRRRAMAQASFSNRMSQWRSRATSRTRAPSTSSRGRGPRFPLDMDLDMRLDILEALEDSVGDFSDMGITDGIFNARRDFTDADYEMLLALDEGNHQHTGASSNLINSLPQSTIQTDNFTDACAICLETPVQGEIIRHLPCLHKFHKDCIDPWLQRKTSCPVCKSSIT*

>Glyma10g24581.2   sequence type=predicted peptide   gene model=Glyma10g24581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEDMKIDHIVEVPDTPDRTTVRHDYQKYLGNPDKRGRAFNAADENNNHSNYISLSPSEESYSSQNAPIFRRAQTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEENEQIRHPKPAFSHRGSRDNATEDKKALKATNGRSSLPVISDSSNTSRNAFIGKYKLDIKTLPGPNISVDHGKGISLSNDSQLQNEKQVSLPPRVSTSPRGRGHKRLVRNGCISPHNIATMEKQLAEQSNHKTKDVEQSHGHSVSSSTVSPVSVDDIVAGERGNGRGKGKEVLAYRSPHRLTFRTASSPVTNYEEINGPSNAIRNPLQYSGGQGGRRTTHNERNANWHLHDVNGHHLRINNDVGRFINGHNTTGMDRRNTGNGQSSNHIHGSQSDHTAQPTSVIIPDVDQSSGTHRTADILTKRQRKRESPSGFMFRGSTGDSSSSSRNPVSDPEVIELLSPPRGSSSSSRTSVLDHEVVDLLSTPRYANRSSEDLDDNDNNSSEARARQVEADERLARELQEQLYHDDPFEGRGIDEDLAWDLQRAEALMRATIDSHSISQPRQLPRAIRQPRTRFPENPSRRRAMAQASFSNRMSQWRSRATSRTRAPSTSSRGRGPRFPLDMDLDMRLDILEALEDSVGDFSDMGITDGIFNARRDFTDADYEMLLALDEGNHQHTGASSNLINSLPQSTIQTDNFTDACAICLETPVQGEIIRHLPCLHKFHKDCIDPWLQRKTSCPVCKSSIT*

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