SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04790 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:1345469-1348143 FORWARD LENGTH=634 | SoyBase | E_val: 2.00E-60 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22766 | Panther | RING FINGER PROTEIN 24-RELATED | JGI | ISS | |
| PTHR22766:SF25 | Panther | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_D7KE78 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KE78_ARALL | SoyBase | E_val: 8.00E-56 | ISS |
| UniRef100_UPI000233C7A7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C7A7 related cluster n=1 Tax=unknown RepID=UPI000233C7A7 | SoyBase | E_val: 0 | ISS |
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Glyma10g24581 not represented in the dataset |
Glyma10g24581 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g18933 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g124600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g24581.2 sequence type=transcript gene model=Glyma10g24581 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCTGCTTCGATCCATCTCCGAATTCGGATCGACCCGACCCGATTCTCGAACTGATAAATTCTCGTCCATTCTCGCTCTCTGTTCATCTCTCTCTTTCAATTCACAATCCCTCTTCAGGTTTCGTTATTTTTTGGATTCTTCGCCTGATTTTGTGTCATATAAATCGTGTTACTACAGTGAAGATATGACAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAACAACTGTAAGGCACGATTATCAGAAATATTTAGGTAATCCTGATAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAATAATAACCACAGTAACTATATATCATTGTCCCCGTCAGAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAATGAACAAATCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAGCACTAAAAGCAACTAATGGAAGGTCTTCGTTACCTGTCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTCATTGGAAAGTATAAACTAGATATTAAAACACTTCCAGGTCCTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATTACAAAATGAAAAGCAAGTATCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGGAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTGGCTGAACAGAGCAACCACAAAACCAAAGATGTTGAACAGAGTCATGGTCATTCAGTTTCTAGCAGTACAGTGTCACCGGTTAGTGTTGATGACATAGTTGCTGGAGAGAGAGGCAATGGTAGAGGGAAAGGAAAGGAAGTACTTGCTTATCGTTCACCACATAGGCTGACTTTTCGTACTGCTAGCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCTAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGGCAAGGTGGTCGGAGAACTACACATAATGAGAGGAATGCTAATTGGCACTTGCATGATGTAAATGGGCATCATTTGAGGATAAATAATGATGTTGGAAGATTTATCAATGGACACAATACAACCGGAATGGACAGAAGAAACACTGGGAATGGTCAAAGCAGCAATCATATACATGGTTCTCAGTCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCATCGTACTGCTGACATTTTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGGTTTATGTTCCGTGGTTCAACTGGGGATTCATCAAGCTCATCCCGGAACCCTGTCTCGGATCCTGAAGTGATTGAGTTGTTATCCCCACCAAGGGGTTCATCAAGCTCATCCCGGACTTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAATAGCTCGGAAGCTCGGGCAAGGCAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCACGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTATGCGTGCAACTATTGATAGCCACAGCATAAGTCAACCGAGACAGCTTCCAAGGGCAATCAGACAGCCTCGTACACGGTTTCCAGAAAATCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGAGCACCTAGCACATCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAGTAGGGGATTTCAGTGATATGGGAATTACTGATGGCATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTTCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGACTCCAGTCCAAGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAATTCATTTTGGAATTTTAGTGGTTAATGGTGCTGTAGTTTGTTATCTCAGCCACCTCATTTTGTCTTTCAAAGTAAAAAGCAAAAAAGTTGAAATTGTAATAGGCATGCTACTCTGTTCTGTTCAATCCTTTGATACATTAGATATTTGAAAGTGAATATAAAGGTATAGAAAAATCTGCAACTTGTTAACTTTCAATGTGCTGATATGCTGTTACTGTTGTCTTTTGAATTATGATTAGTTCTGCGACATGAATGATGCACGTTGAGAAAACTGCTCTGAATCACGGTGTCGTAATTGAACTTCTACTGTTGGTGCTAATGAAGAGTCTGCAAAGCAGAGACAACTCTGAAGGCCGTATTATTTCTTAAGATAGAGATATGACCATTTAGGAATCCTAATGTTGAAATGTAACCAATAACATTGTAATTTTATTTTAATTGTTATTTATTTTAAAACTACCAATTTTTAAAACTTAGTTCTTATTAATCTTCAT
>Glyma10g24581.1 sequence type=CDS gene model=Glyma10g24581 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAACAACTGTAAGGCACGATTATCAGAAATATTTAGGTAATCCTGATAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAATAATAACCACAGTAACTATATATCATTGTCCCCGTCAGAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAATGAACAAATCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAGCACTAAAAGCAACTAATGGAAGGTCTTCGTTACCTGTCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTCATTGGAAAGTATAAACTAGATATTAAAACACTTCCAGGTCCTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATTACAAAATGAAAAGCAAGTATCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGGAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTGGCTGAACAGAGCAACCACAAAACCAAAGATGTTGAACAGAGTCATGGTCATTCAGTTTCTAGCAGTACAGTGTCACCGGTTAGTGTTGATGACATAGTTGCTGGAGAGAGAGGCAATGGTAGAGGGAAAGGAAAGGAAGTACTTGCTTATCGTTCACCACATAGGCTGACTTTTCGTACTGCTAGCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCTAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGGCAAGGTGGTCGGAGAACTACACATAATGAGAGGAATGCTAATTGGCACTTGCATGATGTAAATGGGCATCATTTGAGGATAAATAATGATGTTGGAAGATTTATCAATGGACACAATACAACCGGAATGGACAGAAGAAACACTGGGAATGGTCAAAGCAGCAATCATATACATGGTTCTCAGTCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCATCGTACTGCTGACATTTTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGGTTTATGTTCCGTGGTTCAACTGGGGATTCATCAAGCTCATCCCGGAACCCTGTCTCGGATCCTGAAGTGATTGAGTTGTTATCCCCACCAAGGGGTTCATCAAGCTCATCCCGGACTTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAATAGCTCGGAAGCTCGGGCAAGGCAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCACGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTATGCGTGCAACTATTGATAGCCACAGCATAAGTCAACCGAGACAGCTTCCAAGGGCAATCAGACAGCCTCGTACACGGTTTCCAGAAAATCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGAGCACCTAGCACATCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAGTAGGGGATTTCAGTGATATGGGAATTACTGATGGCATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTTCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGACTCCAGTCCAAGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA >Glyma10g24581.2 sequence type=CDS gene model=Glyma10g24581 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAACAACTGTAAGGCACGATTATCAGAAATATTTAGGTAATCCTGATAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAATAATAACCACAGTAACTATATATCATTGTCCCCGTCAGAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAATGAACAAATCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAGCACTAAAAGCAACTAATGGAAGGTCTTCGTTACCTGTCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTCATTGGAAAGTATAAACTAGATATTAAAACACTTCCAGGTCCTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATTACAAAATGAAAAGCAAGTATCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGGAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTGGCTGAACAGAGCAACCACAAAACCAAAGATGTTGAACAGAGTCATGGTCATTCAGTTTCTAGCAGTACAGTGTCACCGGTTAGTGTTGATGACATAGTTGCTGGAGAGAGAGGCAATGGTAGAGGGAAAGGAAAGGAAGTACTTGCTTATCGTTCACCACATAGGCTGACTTTTCGTACTGCTAGCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCTAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGGCAAGGTGGTCGGAGAACTACACATAATGAGAGGAATGCTAATTGGCACTTGCATGATGTAAATGGGCATCATTTGAGGATAAATAATGATGTTGGAAGATTTATCAATGGACACAATACAACCGGAATGGACAGAAGAAACACTGGGAATGGTCAAAGCAGCAATCATATACATGGTTCTCAGTCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCATCGTACTGCTGACATTTTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGGTTTATGTTCCGTGGTTCAACTGGGGATTCATCAAGCTCATCCCGGAACCCTGTCTCGGATCCTGAAGTGATTGAGTTGTTATCCCCACCAAGGGGTTCATCAAGCTCATCCCGGACTTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAATAGCTCGGAAGCTCGGGCAAGGCAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCACGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTATGCGTGCAACTATTGATAGCCACAGCATAAGTCAACCGAGACAGCTTCCAAGGGCAATCAGACAGCCTCGTACACGGTTTCCAGAAAATCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGAGCACCTAGCACATCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAGTAGGGGATTTCAGTGATATGGGAATTACTGATGGCATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTTCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGACTCCAGTCCAAGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA
>Glyma10g24581.1 sequence type=predicted peptide gene model=Glyma10g24581 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTEDMKIDHIVEVPDTPDRTTVRHDYQKYLGNPDKRGRAFNAADENNNHSNYISLSPSEESYSSQNAPIFRRAQTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEENEQIRHPKPAFSHRGSRDNATEDKKALKATNGRSSLPVISDSSNTSRNAFIGKYKLDIKTLPGPNISVDHGKGISLSNDSQLQNEKQVSLPPRVSTSPRGRGHKRLVRNGCISPHNIATMEKQLAEQSNHKTKDVEQSHGHSVSSSTVSPVSVDDIVAGERGNGRGKGKEVLAYRSPHRLTFRTASSPVTNYEEINGPSNAIRNPLQYSGGQGGRRTTHNERNANWHLHDVNGHHLRINNDVGRFINGHNTTGMDRRNTGNGQSSNHIHGSQSDHTAQPTSVIIPDVDQSSGTHRTADILTKRQRKRESPSGFMFRGSTGDSSSSSRNPVSDPEVIELLSPPRGSSSSSRTSVLDHEVVDLLSTPRYANRSSEDLDDNDNNSSEARARQVEADERLARELQEQLYHDDPFEGRGIDEDLAWDLQRAEALMRATIDSHSISQPRQLPRAIRQPRTRFPENPSRRRAMAQASFSNRMSQWRSRATSRTRAPSTSSRGRGPRFPLDMDLDMRLDILEALEDSVGDFSDMGITDGIFNARRDFTDADYEMLLALDEGNHQHTGASSNLINSLPQSTIQTDNFTDACAICLETPVQGEIIRHLPCLHKFHKDCIDPWLQRKTSCPVCKSSIT* >Glyma10g24581.2 sequence type=predicted peptide gene model=Glyma10g24581 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTEDMKIDHIVEVPDTPDRTTVRHDYQKYLGNPDKRGRAFNAADENNNHSNYISLSPSEESYSSQNAPIFRRAQTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEENEQIRHPKPAFSHRGSRDNATEDKKALKATNGRSSLPVISDSSNTSRNAFIGKYKLDIKTLPGPNISVDHGKGISLSNDSQLQNEKQVSLPPRVSTSPRGRGHKRLVRNGCISPHNIATMEKQLAEQSNHKTKDVEQSHGHSVSSSTVSPVSVDDIVAGERGNGRGKGKEVLAYRSPHRLTFRTASSPVTNYEEINGPSNAIRNPLQYSGGQGGRRTTHNERNANWHLHDVNGHHLRINNDVGRFINGHNTTGMDRRNTGNGQSSNHIHGSQSDHTAQPTSVIIPDVDQSSGTHRTADILTKRQRKRESPSGFMFRGSTGDSSSSSRNPVSDPEVIELLSPPRGSSSSSRTSVLDHEVVDLLSTPRYANRSSEDLDDNDNNSSEARARQVEADERLARELQEQLYHDDPFEGRGIDEDLAWDLQRAEALMRATIDSHSISQPRQLPRAIRQPRTRFPENPSRRRAMAQASFSNRMSQWRSRATSRTRAPSTSSRGRGPRFPLDMDLDMRLDILEALEDSVGDFSDMGITDGIFNARRDFTDADYEMLLALDEGNHQHTGASSNLINSLPQSTIQTDNFTDACAICLETPVQGEIIRHLPCLHKFHKDCIDPWLQRKTSCPVCKSSIT*
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