Glyma10g24476 - SoyBase

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Report for Sequence Feature Glyma10g24476

Feature Type:	gene_model
Chromosome:	Gm10
Start:	31917383
stop:	31918661
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g24476

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60600	AT	Annotation by Michelle Graham. TAIR10: UbiA prenyltransferase family protein \| chr1:22324807-22326395 REVERSE LENGTH=287	SoyBase	E_val: 3.00E-73	ISS
GO:0009772	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010236	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastoquinone biosynthetic process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0042372	GO-bp	Annotation by Michelle Graham. GO Biological Process: phylloquinone biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004659	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity	SoyBase	N/A	ISS
GO:0046428	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	SoyBase	N/A	ISS
PTHR13929	Panther	1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE	JGI		ISS
PTHR24325	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24325:SF195	Panther		JGI		ISS
PF01040	PFAM	UbiA prenyltransferase family	JGI		ISS
UniRef100_Q0WUA3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic n=2 Tax=Arabidopsis thaliana RepID=MENA_ARATH	SoyBase	E_val: 2.00E-69	ISS
UniRef100_UPI000233C7A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C7A5 related cluster n=1 Tax=unknown RepID=UPI000233C7A5	SoyBase	E_val: 2.00E-150	ISS

Expression Patterns of Glyma10g24476

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g24476 not represented in the dataset	Glyma10g24476 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g24476 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g123800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g24476

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g24476

Limit To All Plant Sequences

>Glyma10g24476.2   sequence type=transcript   gene model=Glyma10g24476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTGTGGAAAGAAACATACGTTCAATATTGTTTCTTGTTTGTGCAATTATTTGTGGCTATATATATCAGTGTCCACCATTTCGGTTAAGCTACCAGGGGCTGGGAGAGCCCTTGAGCTTTGCAGCATTTGGGCCTTTTGCCACTTGTGCTTTTTATTTATTACATGGCAGTTCAAGTGTGATGAACCATTTCCCCTTAAGTGGAACGGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCTCTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAGGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCACTAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAATCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATTCCTTTGTGCATTGACCTTGCCGATGGGAAACCTAGTAGTTAGATTTGTCGAAGACAATTACAAGGCAATTGTATTCTCACATAACAAAAATAAGATTTTCATGGCTAAGTACTTCTGTGTGAGGCTTCATGCATTGTTTGGAGTTGCACTGGCTTTAGGACTAGTGCTGGCTCGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATTGTTCTTAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCTAAACGAGTCTTTGACTTCCTCCGTGATGAAAACTCTAGGAATGAGGTATGTGCAACAAAAAGCTAA

Coding sequences of Glyma10g24476

Limit To All Plant Sequences

>Glyma10g24476.1   sequence type=CDS   gene model=Glyma10g24476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAAAGTTATTCAGGAGTCATTAACTTGCAATTTTCTGTGCTTGGCCAATTGTTGTTGCAGTGTCCACCATTTCGGTTAAGCTACCAGGGGCTGGGAGAGCCCTTGAGCTTTGCAGCATTTGGGCCTTTTGCCACTTGTGCTTTTTATTTATTACATGGCAGTTCAAGTGTGATGAACCATTTCCCCTTAAGTGGAACGGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCTCTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAGGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCACTAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAATCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATTCCTTTGTGCATTGACCTTGCCGATGGGAAACCTAGTAGTTAGATTTGTCGAAGACAATTACAAGGCAATTGTATTCTCACATAACAAAAATAAGATTTTCATGGCTAAGTACTTCTGTGTGAGGCTTCATGCATTGTTTGGAGTTGCACTGGCTTTAGGACTAGTGCTGGCTCGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATTGTTCTTAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCTAAACGAGTCTTTGACTTCCTCCGTGATGAAAACTCTAGGAATGAGGTATGTGCAACAAAAAGCTAA

>Glyma10g24476.2   sequence type=CDS   gene model=Glyma10g24476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCATTTCCCCTTAAGTGGAACGGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCTCTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAGGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCACTAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAATCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATTCCTTTGTGCATTGACCTTGCCGATGGGAAACCTAGTAGTTAGATTTGTCGAAGACAATTACAAGGCAATTGTATTCTCACATAACAAAAATAAGATTTTCATGGCTAAGTACTTCTGTGTGAGGCTTCATGCATTGTTTGGAGTTGCACTGGCTTTAGGACTAGTGCTGGCTCGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATTGTTCTTAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCTAAACGAGTCTTTGACTTCCTCCGTGATGAAAACTCTAGGAATGAGGTATGTGCAACAAAAAGCTAA

Predicted protein sequences of Glyma10g24476

Limit To All Plant Sequences

>Glyma10g24476.1   sequence type=predicted peptide   gene model=Glyma10g24476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLESYSGVINLQFSVLGQLLLQCPPFRLSYQGLGEPLSFAAFGPFATCAFYLLHGSSSVMNHFPLSGTVLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLYALLVAFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKAIVFSHNKNKIFMAKYFCVRLHALFGVALALGLVLARKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEVCATKS*

>Glyma10g24476.2   sequence type=predicted peptide   gene model=Glyma10g24476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNHFPLSGTVLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLYALLVAFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKAIVFSHNKNKIFMAKYFCVRLHALFGVALALGLVLARKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEVCATKS*

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