Glyma10g23840 - SoyBase

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Report for Sequence Feature Glyma10g23840

Feature Type:	gene_model
Chromosome:	Gm10
Start:	30428678
stop:	30458591
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g23840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52490	AT	Annotation by Michelle Graham. TAIR10: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein \| chr3:19455850-19458721 REVERSE LENGTH=815	SoyBase	E_val: 0	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG1051	KOG	Chaperone HSP104 and related ATP-dependent Clp proteases	JGI		ISS
PTHR11638	Panther	ATP-DEPENDENT CLP PROTEASE	JGI		ISS
PTHR11638:SF2	Panther	CLPA/CLPB/CLPC-RELATED	JGI		ISS
PF02861	PFAM	Clp amino terminal domain	JGI		ISS
UniRef100_G7I415	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Medicago truncatula RepID=G7I415_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LAG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAG8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g23840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g23840

Paralog	Evidence	Comments
Glyma20g17560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g23840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U032200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g23840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g23840

Limit To All Plant Sequences

>Glyma10g23840.1   sequence type=CDS   gene model=Glyma10g23840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGCAGGAGTTTGCAGCATACAGCTACAGGCTCTGACATCAGAGGCTGCAACCCTAGTTAAACAAGCTGTTACTCTTGCCACAAGAAGAGGGCATGCTCAAGTGACCCCTCTTCACATTGCCACTGTCATGCTTGCTACTTCCACAGGCCTTCTCCGCAAAGCTTGCCTTCAATGCCACTCTCACCCTCTCCAATACAAGGCATTGGAACTTTGCTTCAACGTTTCCCTCAACCGTTTGCCAGCATCCACACCAAACCCTCTTCTGATAAGTCCTCCATATAATTCCACCACTACTACTCCCTCACTTTCCAATGCCTTGGTTGCAGCCTTCAAACGTGCTCAGGCTCACCAACGCCGTGGATCCATTGATCAGAACCAGCAGCAACCCATTTTGACTTTAAAGATTAAGGTGGAGCAGCTCATAGTCTCTATCCTTGATGACCCTAGTATTAGTAGGGTCATGCGAGAAGCTGGTTTCTCTAGCTCCCTTGTTAAAACAAGGGTTGAACAAGCTGTTTCAATGGAATTAGTTTGTTCACAGCAACAAGCTTATTCCAAGGAAAACACCACCGAGCTTCAAGTTCTTGGTGGTGGTACTAGCAGCATGCCCCCTTCTAGATCCTTTGGTCATTTTGGAGGCTCATTCAAGTCTATGGAGGACCTTGTTCATGATGATGCTGGTGATCATGTAGTAGATGATGTAACTAGTGTTTTGAGCGAACTTGTGAGCAAGAGAAGAAACACAGTCATTGTTGGGGAGAGTCTTGCTAGTCCTGAGGGAATAGTTAGGGGACTGATAGAGAATTTAGAGAGAGGGAGTGTTCAAGGAGAGTTGAGGTTTGTACAATTTGTGAGTCTCCCTCTTGTCTCCTTCAGGAACATTGGCAAGAAGGAGGTTGAAAGGAAGCTTGTGGAGCTTAGAAACCTTGTAAAAAGTCATGTGGGAAGAGGGTTTATTCTATACTTGGGTGATCTGAAGTGGTTGTTTGAGTTCTGGTCAAGTTACTGTGAGCAAAGAACAAACTACTACTGTTCTGTGGTGCATATAGTGATGGAGCTTAAAAAATTGATTAGTGGAAATGGGGAGAATGGTAGATTGTGGCTTATGGGGATTGCAACTTTTGGAACATACATGAAGGGCCAAGCATGTCACCCCTCCCTTGAAACTATTTGGGATCTTCACCTCTTTACAGTTCCAGTGTTACTATCATCCTTGAGACTTGGTTTAACTTTTGATAGTGATTTTCAAGTTCAGGAGAGAAGCAAGGTAACATTCAAGGACGAATCTTTTGAAGAACGAGCCAAAGTGCGCAAGTATCTAACTTGCTGCAGAGATTTCTCATTAAATTTTGAAAAAGAAGCTAAAAGCACCACTAATAGTATTACTATAAGCAAGAGAGATTGCACCACTAACTTGCCAACATGGCTCCAAAATTGCAAGGAAGAGAGAAGTCGCATCATGGAGAATCAGGAAAATGCTAAGCTTAGGGATATTTGTAAGAAATGGAACTCATTTTGCAGTTCAGCGCATGGATTTCCTTCCAATCCTGAGAAACAATTTTTTTTCATTTCATCCTCTCCTTCATCCCCTACTTCAGTCTCTTCACATGAAAGAAAGCTTAGTTTGAATCTGAAACACCTAAATTGGCCACTCATTTCTGAACCAAAACAAGTACCTAAAGAATGTGAGTTATACACTGAGACTACTGTTAGTGATGATTCCTATGAAGGAAACTTGATAATGTTCATGCCAGAGAAGAACATTCCTAAGCCAGACCTTTTGTCAAATCCCAATTCTAGCCCCAATTCTGCTTCTTCAAGTGAGGCAGTGGAAGGTTTGGACAGCACTCAAATATTCAAGGAGCATAATGATGAAAATCTAAAGATTCTCTGTGATGCATTGTTGAAAAAGGTTTCACAACAGAAAGAAATAGTTAAGGAGATTGCAAGCACTGTGCTTCTTTGCAGGTCAGGAATGAGAGAAGGAGTGAATCACTTAGTGAAGAGAGATGATAGGCAAGAAATTTGGTTTTTCTTTTTAGGTTTGGATTCTCAAGCAAAAGAAATGGTCTCAAAAGAGCTAGCTAAAGTTGTTTTTGGCTCTTACAGTAACTTTGTTTCCATTGGTATAAGTAGTTTCTCTTCCACTCATGAGGAGTCCAAAAATAAAAGACCAAGAGATGAGTTTGGTGGCAGTTATCTTCAGAGGTTTGGGGAAGCACTGAATGAGAACCCTCATAGGGTGTTCTTCTTGGAAGATTTGGAGCAAGTTGATCATTTTTCTAAAAAGGGTGTTAAGAAAGGAATTGAAAGTGGAACTATAACCCTTCCTGGTGGTGAATCTGTGCCTCTCAAGGATGCAATTGTCATTTTCAGTAGTGAAAGCTTCAGTTCAGTGCCAAGAGCTTGTTCTCCTGCAAGAACCACTTCTCCATTTTCCGATGAAGACATGGAAAAGAATAATATTAACAAATCAGAGGAGAAAACTCCATGCCTCTCTTTGGATTTGAACATGGCCATTGAAGTTGATGTGCAAAAAAATGTGCATTTAGATGGAGACACTGCTGAGATACTAGAGTTAGTTGATAAGCAAATTAATTTTAAAATATGA

Predicted protein sequences of Glyma10g23840

Limit To All Plant Sequences

>Glyma10g23840.1   sequence type=predicted peptide   gene model=Glyma10g23840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRAGVCSIQLQALTSEAATLVKQAVTLATRRGHAQVTPLHIATVMLATSTGLLRKACLQCHSHPLQYKALELCFNVSLNRLPASTPNPLLISPPYNSTTTTPSLSNALVAAFKRAQAHQRRGSIDQNQQQPILTLKIKVEQLIVSILDDPSISRVMREAGFSSSLVKTRVEQAVSMELVCSQQQAYSKENTTELQVLGGGTSSMPPSRSFGHFGGSFKSMEDLVHDDAGDHVVDDVTSVLSELVSKRRNTVIVGESLASPEGIVRGLIENLERGSVQGELRFVQFVSLPLVSFRNIGKKEVERKLVELRNLVKSHVGRGFILYLGDLKWLFEFWSSYCEQRTNYYCSVVHIVMELKKLISGNGENGRLWLMGIATFGTYMKGQACHPSLETIWDLHLFTVPVLLSSLRLGLTFDSDFQVQERSKVTFKDESFEERAKVRKYLTCCRDFSLNFEKEAKSTTNSITISKRDCTTNLPTWLQNCKEERSRIMENQENAKLRDICKKWNSFCSSAHGFPSNPEKQFFFISSSPSSPTSVSSHERKLSLNLKHLNWPLISEPKQVPKECELYTETTVSDDSYEGNLIMFMPEKNIPKPDLLSNPNSSPNSASSSEAVEGLDSTQIFKEHNDENLKILCDALLKKVSQQKEIVKEIASTVLLCRSGMREGVNHLVKRDDRQEIWFFFLGLDSQAKEMVSKELAKVVFGSYSNFVSIGISSFSSTHEESKNKRPRDEFGGSYLQRFGEALNENPHRVFFLEDLEQVDHFSKKGVKKGIESGTITLPGGESVPLKDAIVIFSSESFSSVPRACSPARTTSPFSDEDMEKNNINKSEEKTPCLSLDLNMAIEVDVQKNVHLDGDTAEILELVDKQINFKI*

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