Glyma10g23750 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g23750

Feature Type:	gene_model
Chromosome:	Gm10
Start:	30283735
stop:	30288399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g23750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22070	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr5:7308255-7309343 FORWARD LENGTH=362	SoyBase	E_val: 3.00E-123	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_I1LAG4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAG4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9C581	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein n=2 Tax=Arabidopsis thaliana RepID=Q9C581_ARATH	SoyBase	E_val: 1.00E-120	ISS

Expression Patterns of Glyma10g23750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g23750

Paralog	Evidence	Comments
Glyma20g17273	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g23750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U032800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g23750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g23750

Limit To All Plant Sequences

>Glyma10g23750.1   sequence type=CDS   gene model=Glyma10g23750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCATCTCCATTGTTAGTGTCCCTCACTTTTTTTCTTTCTCTCCCTCTCTTGTTGTTTCTATCTCCTCATATTTTGTCCCCTCCCGACGCCGACGACCTCGCCCTCTTCCGCCGCGCCGCCGCCCCCCACACAACCTCCCACCTCTCCGCCACCCCGAAAATCGCCTTCCTCTTCCTCACCAACTCCAATCTCACCTTCTCCCCTCTCTGGGAGAAGTTCTTCTCTTCTTCTTCCTCCGATCACCACCGCCACCGCCTCTTCAACATCTACATCCACGCCGACCCCACCAAAAACATCACCATCTCCGGCGGCGTCTTCCACCACCTCGTCCCCGCGAAACCAACCGCCCGCGCCTCCCCCTCCCTCATCTCCGCCGCCCGCCGCCTCCTCGCCGCCGCCCTCCTCGACGACCCCCTCAACCACTACTTCGCCCTCCTCTCCCAATACTGTATCCCTCTCCACTCCCTTCAATTCACTCACAACTTCCTCTTCAAAAACCCACACAAAAGCTTCATTGAGATTCTTTCTAACGAACCCAACCTCTTCGACCGCTACACCGCGCGTGGCGAACACGCGATGCTCCCAGAAATCCCCTTCTCCTCCTTCCGCGTGGGGTCGCAGTTCTTCATTCTCACTCGCCGCCACGCGCGCGTGGTGGTGCGTGACATTCTTCTCTGGAACAAGTTTCGCCTTCCGTGTGTCACGGAAGAGCCTTGTTACCCAGAAGAGCATTATTTTCCGACGCTATTGTCCATGCAGGATCCGAATGGGTGTACCGGGTTTACCCTGACCCGGGTCAACTGGACCGGGTGCTGGGACGGGCACCCGCATCTGTACACCGCCCCGGAGGTCTCGCCGGAGCTCATTCTCCGGCTGAGAGAATCGAATTCGAGCAGTTACGTGTACCTCTTCGCGAGGAAGTTCGCGCCGGAGTGTCTTACGCCGTTGATGGAGATCGCCGATGACGTCATTTTACGGGAGTGA

Predicted protein sequences of Glyma10g23750

Limit To All Plant Sequences

>Glyma10g23750.1   sequence type=predicted peptide   gene model=Glyma10g23750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSSPLLVSLTFFLSLPLLLFLSPHILSPPDADDLALFRRAAAPHTTSHLSATPKIAFLFLTNSNLTFSPLWEKFFSSSSSDHHRHRLFNIYIHADPTKNITISGGVFHHLVPAKPTARASPSLISAARRLLAAALLDDPLNHYFALLSQYCIPLHSLQFTHNFLFKNPHKSFIEILSNEPNLFDRYTARGEHAMLPEIPFSSFRVGSQFFILTRRHARVVVRDILLWNKFRLPCVTEEPCYPEEHYFPTLLSMQDPNGCTGFTLTRVNWTGCWDGHPHLYTAPEVSPELILRLRESNSSSYVYLFARKFAPECLTPLMEIADDVILRE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain