Report for Sequence Feature Glyma10g23630
Feature Type: gene_model
Chromosome: Gm10
Start: 29959239
stop: 29975535
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g23630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02120 AT
Annotation by Michelle Graham. TAIR10: GRAM domain family protein | chr1:395761-399720 FORWARD LENGTH=598
SoyBase E_val: 2.00E-180 ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0043069 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
KOG1032
KOG
Uncharacterized conserved protein, contains GRAM domain
JGI ISS
PTHR23319 Panther
UNCHARACTERIZED
JGI ISS
PF02893 PFAM
GRAM domain
JGI ISS
UniRef100_D3G9M3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Vascular associated death 1 n=1 Tax=Glycine max RepID=D3G9M3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1LAF8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAF8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g23630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g23630
Paralog Evidence Comments
Glyma20g17043 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g23630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g120400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g23630
Transcripts of Glyma10g23630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g23630.2 sequence type=transcript gene model=Glyma10g23630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACGAGAACGGGTTGATCCGTCGAATCCATTTCGTCAGCTCCTAAGCTAACATCACAAATCAATTTAACGCAACAGATGGCGAATGCCTAACAGAAGAAATAGTCACGTGTCGTGAAGAGTCAACATCACCATGGCGTAGAAGATAATGATTTTTTTCTTCTTCTTTTTATAATTTTTTTTATCAGTACAGCTACCGACGTTGACTCAATTTAATTTTTTTATCAGTGCAGCATTACGACATTCCTTTTAAGAACGCTTCTTCTTCGGTTCCGTCGGCGCCGTTACTACTTAAAACCGCGTAAAACCTTCTTCAACCACCACCGTTCTCTTTTCTCTTCTCACTGAATTTTCAGATCTACTTTTTCTCCTCAGTGGAGTAATAATATTGATTGATTCACGCAGCTATAGCCATTTCAGATCTAATATTCTATATATCTTTCTCTCTCTCTCTATTCTCTCTCTTCGATGGCTTCCACGGTTGTTGCCGCCGCTGCCAGGAGTGACGTGCCGCCGCGGCAGCCGGTGGTGGATCCTTCGCCGTCGTCGTCCCCCGACAACGCCGCTAATCGGAGCGATTCCTTCAATTCCTCGCCCAACCACTTCTCCGATGCTGAAATTCAGTTACAAACTCCAGACGTATTGAAGAGTGAAGAGTATCGACAATTGTTCCGTCTTCCACAGGAGGAAGTCCTTATTGAAGATTTTAATTGTGCCCTCCAGGAAAACCTACTTATTCAGGGTCATATGTACCTCTTTGTCAACTTCATTTGTTTCTACTCAAACATATTTGGATATGAGACAAAGAAAATAATCCCATTCCCTGAAGTCACGAGTGTAAGGAGGGCAAAGACGGCTGGGCTCTTTCCCAATGCCATTGAGATTCTTGCTGGAAACAAGAAGTACTTCTTTGCATCCTTCCTATCCCGTGATGAAGCTTTCAGGATTATTAATGAGGGATGGTCGCGACAGGGCAATGGAGCCATAGCAATTATGGAACAGAAGGAATCAATGTCTGAGTCCAGCAGCCAAGAGAATGGATTTGTAGCTGTTGAAAATGTCAAAAGTTCTGATATAACTGACAACGGATCACTTTCTACTGATCTGAGCAAAGATACGACGCTTACATCCATTGTTGGGGATGATCCTGTATCGACGGCAGATTCAGAGAAGCAATGCAGTGTAAAACAGGTTGCTGAACCTGAACTGAATAATGATGCCCCAAGTGCTGCAAGTGTGAGTTGGAAGTGGAACGAGGAGGATATTGATGCCCCATCAATTCTTGAAGCATATACATGTGTTGCAGATTCAGTGTTTCCGATGAAGGTTGAAGACTTCTTTAGGTACTTATTCTCAGATGATGCTCTAAATTTTCTTGAGTCTTTTCGCCAAAAGTGTGGTGATAAAGACTTTAGGTGTTCTCCGTGGCATCCTCAAGAGAAATTTGGGTATGCTCGTGAACTGTCATTTCAACATCCAATAAAAATTTATCTTGGAGCGAAATTTGGTGGCTGCCATGAGGTCCAGAAATTTCGTGTTTATAGGAACAGTCATTTGGTTATCGAGACGTCGCAAGAAGTCAGTGATGTACCTTATGCAGATTATTTCCGGGTTGAGGGACTGTGGAGTGTAGAGAGAGACAAGGATGAATCAAAAGAATGCTGCACTTTGCGGGTATATGTGAATGTGGCATTTTCTAAAAAAACTATTTGGAAAGGCAAAATAATACAATCAACAATTGAAGAATGTCGAGATGCTTATGCGACATGGATAAACATGGCACATGAAATGTTGAAGCAGAAGAACCTTGAAAAACAAGCTCAAAATGGTGAAATCAATTTAGATAGAGAAGTGAAGACTAGAGAATCTTCAGAAGGGTCACCGGAGCAAAGTAACCCTACAAAGATACTAGCTACATCCAATGCCTTTGATGCTGCTACCCACAATGTCGGCTCTCACTTGCAGGGAAATTTCATCGAACCATCATCTGTTTCACTGTTTAAAGAGTTTATGACGAAGTTCAGATCATCTTTGAGAAGTCATAGCAATCTTTCTCTGCTCCTTATTACTATTGTCGCTCTGATTTTCTTCATTCAGTTTAGCATACTTGTGTTATTGGCCAGACCTCAACACATACATATGAACACTCCTGTAGACATCATGAACAGGATGAACAATGAGGTCACTAGAAGTCCTTCAGACATAGCGTGGCTGGAGAAAAGAATTCATCACCTCAAAGATGAAATGTACATGGTTGAGAGTAGGCTTGAAAGGATGCGGTATGAACATTTACTTTTAAAAAAGCAATTAAAGGACCTAGAACACTAGTTACCAAATTTCATTGTCCCCTCTTATAGCATCTTTTTTTTTTTTTGTATATACATGTGATGTGATATATAGATATGATATTTAATTTCGTAAATTCATTCTTCTCCCTCGTTGTAAATGAGGACTTTATTTTATACCCAAAATTAAAGAAATGAGGAACTTGTGATTTAGGGTTTGTTTTCAAGTATCAAATAATAGGATGAAATGCAATGGATGACTATTATAATTTTAAGGATTAATTGAACTTTGTTTCTATGTCAGTTTGAATGCCAATTTGGTCTCCTTAATTCTATTTTATTTTTGGTATTAATGGGGCTTTTTGTTTAAAACAAGTATTAAGGGTGATGCTAGGTGCACCCGGCATTATTG
Coding sequences of Glyma10g23630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g23630.1 sequence type=CDS gene model=Glyma10g23630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCCACGGTTGTTGCCGCCGCTGCCAGGAGTGACGTGCCGCCGCGGCAGCCGGTGGTGGATCCTTCGCCGTCGTCGTCCCCCGACAACGCCGCTAATCGGAGCGATTCCTTCAATTCCTCGCCCAACCACTTCTCCGATGCTGAAATTCAGTTACAAACTCCAGACGTATTGAAGAGTGAAGAGTATCGACAATTGTTCCGTCTTCCACAGGAGGAAGTCCTTATTGAAGATTTTAATTGTGCCCTCCAGGAAAACCTACTTATTCAGGGTCATATGTACCTCTTTGTCAACTTCATTTGTTTCTACTCAAACATATTTGGATATGAGACAAAGAAAATAATCCCATTCCCTGAAGTCACGAGTGTAAGGAGGGCAAAGACGGCTGGGCTCTTTCCCAATGCCATTGAGATTCTTGCTGGAAACAAGAAGTACTTCTTTGCATCCTTCCTATCCCGTGATGAAGCTTTCAGGATTATTAATGAGGGATGGTCGCGACAGGGCAATGGAGCCATAGCAATTATGGAACAGAAGGAATCAATGTCTGAGTCCAGCAGCCAAGAGAATGGATTTGTAGCTGTTGAAAATGTCAAAAGTTCTGATATAACTGACAACGGATCACTTTCTACTGATCTGAGCAAAGATACGACGCTTACATCCATTGTTGGGGATGATCCTGTATCGACGGCAGATTCAGAGAAGCAATGCAGTGTAAAACAGGTTGCTGAACCTGAACTGAATAATGATGCCCCAAGTGCTGCAAGTGTGAGTTGGAAGTGGAACGAGGAGGATATTGATGCCCCATCAATTCTTGAAGCATATACATGTGTTGCAGATTCAGTGTTTCCGATGAAGGTTGAAGACTTCTTTAGGTACTTATTCTCAGATGATGCTCTAAATTTTCTTGAGTCTTTTCGCCAAAAGTGTGGTGATAAAGACTTTAGGTGTTCTCCGTGGCATCCTCAAGAGAAATTTGGGTATGCTCGTGAACTGTCATTTCAACATCCAATAAAAATTTATCTTGGAGCGAAATTTGGTGGCTGCCATGAGGTCCAGAAATTTCGTGTTTATAGGAACAGTCATTTGGTTATCGAGACGTCGCAAGAAGTCAGTGATGTACCTTATGCAGATTATTTCCGGGTTGAGGGACTGTGGAGTGTAGAGAGAGACAAGGATGAATCAAAAGAATGCTGCACTTTGCGGGTATATGTGAATGTGGCATTTTCTAAAAAAACTATTTGGAAAGGCAAAATAATACAATCAACAATTGAAGAATGTCGAGATGCTTATGCGACATGGATAAACATGGCACATGAAATGTTGAAGCAGAAGAACCTTGAAAAACAAGCTCAAAATGGTGAAATCAATTTAGATAGAGAAGTGAAGACTAGAGAATCTTCAGAAGGGTCACCGGAGCAAAGTAACCCTACAAAGATACTAGCTACATCCAATGCCTTTGATGCTGCTACCCACAATGTCGGCTCTCACTTGCAGGGAAATTTCATCGAACCATCATCTGTTTCACTGTTTAAAGAGTTTATGACGAAGTTCAGATCATCTTTGAGAAGTCATAGCAATCTTTCTCTGCTCCTTATTACTATTGTCGCTCTGATTTTCTTCATTCAGCAGTTTAGCATACTTGTGTTATTGGCCAGACCTCAACACATACATATGAACACTCCTGTAGACATCATGAACAGGATGAACAATGAGGTCACTAGAAGTCCTTCAGACATAGCGTGGCTGGAGAAAAGAATTCATCACCTCAAAGATGAAATGTACATGGTTGAGAGTAGGCTTGAAAGGATGCGGTATGAACATTTACTTTTAAAAAAGCAATTAAAGGACCTAGAACACTAG
>Glyma10g23630.2 sequence type=CDS gene model=Glyma10g23630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCCACGGTTGTTGCCGCCGCTGCCAGGAGTGACGTGCCGCCGCGGCAGCCGGTGGTGGATCCTTCGCCGTCGTCGTCCCCCGACAACGCCGCTAATCGGAGCGATTCCTTCAATTCCTCGCCCAACCACTTCTCCGATGCTGAAATTCAGTTACAAACTCCAGACGTATTGAAGAGTGAAGAGTATCGACAATTGTTCCGTCTTCCACAGGAGGAAGTCCTTATTGAAGATTTTAATTGTGCCCTCCAGGAAAACCTACTTATTCAGGGTCATATGTACCTCTTTGTCAACTTCATTTGTTTCTACTCAAACATATTTGGATATGAGACAAAGAAAATAATCCCATTCCCTGAAGTCACGAGTGTAAGGAGGGCAAAGACGGCTGGGCTCTTTCCCAATGCCATTGAGATTCTTGCTGGAAACAAGAAGTACTTCTTTGCATCCTTCCTATCCCGTGATGAAGCTTTCAGGATTATTAATGAGGGATGGTCGCGACAGGGCAATGGAGCCATAGCAATTATGGAACAGAAGGAATCAATGTCTGAGTCCAGCAGCCAAGAGAATGGATTTGTAGCTGTTGAAAATGTCAAAAGTTCTGATATAACTGACAACGGATCACTTTCTACTGATCTGAGCAAAGATACGACGCTTACATCCATTGTTGGGGATGATCCTGTATCGACGGCAGATTCAGAGAAGCAATGCAGTGTAAAACAGGTTGCTGAACCTGAACTGAATAATGATGCCCCAAGTGCTGCAAGTGTGAGTTGGAAGTGGAACGAGGAGGATATTGATGCCCCATCAATTCTTGAAGCATATACATGTGTTGCAGATTCAGTGTTTCCGATGAAGGTTGAAGACTTCTTTAGGTACTTATTCTCAGATGATGCTCTAAATTTTCTTGAGTCTTTTCGCCAAAAGTGTGGTGATAAAGACTTTAGGTGTTCTCCGTGGCATCCTCAAGAGAAATTTGGGTATGCTCGTGAACTGTCATTTCAACATCCAATAAAAATTTATCTTGGAGCGAAATTTGGTGGCTGCCATGAGGTCCAGAAATTTCGTGTTTATAGGAACAGTCATTTGGTTATCGAGACGTCGCAAGAAGTCAGTGATGTACCTTATGCAGATTATTTCCGGGTTGAGGGACTGTGGAGTGTAGAGAGAGACAAGGATGAATCAAAAGAATGCTGCACTTTGCGGGTATATGTGAATGTGGCATTTTCTAAAAAAACTATTTGGAAAGGCAAAATAATACAATCAACAATTGAAGAATGTCGAGATGCTTATGCGACATGGATAAACATGGCACATGAAATGTTGAAGCAGAAGAACCTTGAAAAACAAGCTCAAAATGGTGAAATCAATTTAGATAGAGAAGTGAAGACTAGAGAATCTTCAGAAGGGTCACCGGAGCAAAGTAACCCTACAAAGATACTAGCTACATCCAATGCCTTTGATGCTGCTACCCACAATGTCGGCTCTCACTTGCAGGGAAATTTCATCGAACCATCATCTGTTTCACTGTTTAAAGAGTTTATGACGAAGTTCAGATCATCTTTGAGAAGTCATAGCAATCTTTCTCTGCTCCTTATTACTATTGTCGCTCTGATTTTCTTCATTCAGTTTAGCATACTTGTGTTATTGGCCAGACCTCAACACATACATATGAACACTCCTGTAGACATCATGAACAGGATGAACAATGAGGTCACTAGAAGTCCTTCAGACATAGCGTGGCTGGAGAAAAGAATTCATCACCTCAAAGATGAAATGTACATGGTTGAGAGTAGGCTTGAAAGGATGCGGTATGAACATTTACTTTTAAAAAAGCAATTAAAGGACCTAGAACACTAG
Predicted protein sequences of Glyma10g23630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g23630.1 sequence type=predicted peptide gene model=Glyma10g23630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASTVVAAAARSDVPPRQPVVDPSPSSSPDNAANRSDSFNSSPNHFSDAEIQLQTPDVLKSEEYRQLFRLPQEEVLIEDFNCALQENLLIQGHMYLFVNFICFYSNIFGYETKKIIPFPEVTSVRRAKTAGLFPNAIEILAGNKKYFFASFLSRDEAFRIINEGWSRQGNGAIAIMEQKESMSESSSQENGFVAVENVKSSDITDNGSLSTDLSKDTTLTSIVGDDPVSTADSEKQCSVKQVAEPELNNDAPSAASVSWKWNEEDIDAPSILEAYTCVADSVFPMKVEDFFRYLFSDDALNFLESFRQKCGDKDFRCSPWHPQEKFGYARELSFQHPIKIYLGAKFGGCHEVQKFRVYRNSHLVIETSQEVSDVPYADYFRVEGLWSVERDKDESKECCTLRVYVNVAFSKKTIWKGKIIQSTIEECRDAYATWINMAHEMLKQKNLEKQAQNGEINLDREVKTRESSEGSPEQSNPTKILATSNAFDAATHNVGSHLQGNFIEPSSVSLFKEFMTKFRSSLRSHSNLSLLLITIVALIFFIQQFSILVLLARPQHIHMNTPVDIMNRMNNEVTRSPSDIAWLEKRIHHLKDEMYMVESRLERMRYEHLLLKKQLKDLEH*
>Glyma10g23630.2 sequence type=predicted peptide gene model=Glyma10g23630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASTVVAAAARSDVPPRQPVVDPSPSSSPDNAANRSDSFNSSPNHFSDAEIQLQTPDVLKSEEYRQLFRLPQEEVLIEDFNCALQENLLIQGHMYLFVNFICFYSNIFGYETKKIIPFPEVTSVRRAKTAGLFPNAIEILAGNKKYFFASFLSRDEAFRIINEGWSRQGNGAIAIMEQKESMSESSSQENGFVAVENVKSSDITDNGSLSTDLSKDTTLTSIVGDDPVSTADSEKQCSVKQVAEPELNNDAPSAASVSWKWNEEDIDAPSILEAYTCVADSVFPMKVEDFFRYLFSDDALNFLESFRQKCGDKDFRCSPWHPQEKFGYARELSFQHPIKIYLGAKFGGCHEVQKFRVYRNSHLVIETSQEVSDVPYADYFRVEGLWSVERDKDESKECCTLRVYVNVAFSKKTIWKGKIIQSTIEECRDAYATWINMAHEMLKQKNLEKQAQNGEINLDREVKTRESSEGSPEQSNPTKILATSNAFDAATHNVGSHLQGNFIEPSSVSLFKEFMTKFRSSLRSHSNLSLLLITIVALIFFIQFSILVLLARPQHIHMNTPVDIMNRMNNEVTRSPSDIAWLEKRIHHLKDEMYMVESRLERMRYEHLLLKKQLKDLEH*