Glyma10g22680 - SoyBase

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Report for Sequence Feature Glyma10g22680

Feature Type:	gene_model
Chromosome:	Gm10
Start:	28707050
stop:	28718086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g22680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51100	AT	Annotation by Michelle Graham. TAIR10: Fe superoxide dismutase 2 \| chr5:20773357-20775635 REVERSE LENGTH=305	SoyBase	E_val: 1.00E-127	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009295	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoid	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0042644	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast nucleoid	SoyBase	N/A	ISS
GO:0004784	GO-mf	Annotation by Michelle Graham. GO Molecular Function: superoxide dismutase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0876	KOG	Manganese superoxide dismutase	JGI		ISS
PTHR11404	Panther	SUPEROXIDE DISMUTASE 2	JGI		ISS
PTHR11404:SF8	Panther	IRON/MANGANESE SUPEROXIDE DISMUTASE	JGI		ISS
PF00081	PFAM	Iron/manganese superoxide dismutases, alpha-hairpin domain	JGI		ISS
PF02777	PFAM	Iron/manganese superoxide dismutases, C-terminal domain	JGI		ISS
UniRef100_I1JDK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1JDK0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JDK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1JDK0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g22680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g22680 not represented in the dataset	Glyma10g22680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g22680

Paralog	Evidence	Comments
Glyma02g09630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g22680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g117100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g22680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g22680

Limit To All Plant Sequences

>Glyma10g22680.3   sequence type=transcript   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTAAAACTAATGTATGAGAGTTGTAACATGTAAAACCCATTTCTACGGATAAAATAAACATTACCAGTGTTACACCCCAGTACATTAGGAGAGCCAAAAGTTTTTGAAAGAGCAGAGTGGAAAGCAGAGGCAGAAGAGATGAATTTGTTATCATCGCCTTCCAGTGCCGCTTCTACTTCTCTATCACCTTCCTGTTTTCTTCCTTGCTACCCTCATCATGGGTTCTCTTCTGGTACCTTCAAATTCTCCAAGAAAGAGAGTAGATGTATAAGGAAAGCTGGAAGTATCACTGCAAAGTTCGAGTTGAAGCCACCACCATATCCACTGAATTCTTTGGAGCCAATTATGAGTGAGGAGACAATCGAATACCATTGGGGGAAGCATCACAGGACTTATGTAGATAATCTGAACAGGCAAATTGATGGAACAGATCTAGATGGGAATTCACTTGAGGACACTATGGTTATTTTGTACAATAAGGGTGACATTCTTCCAGCCTTCAACAATGCAGCGCAGGCATGGAACCATGACTTCTTCTGGGAGTCCATGAAACCTGGTGGTGGTGGAAGGCCATCTGGGGAGCTTCTAAAGCTGATTGAAAGAGACTTTGGTTCATTAAAAAAATTCCTTGATGAGTTTAAGACTGCTGCTTCAGCACAATTTGGTTCAGGATGGGCATGGCTTGCATATAAAGAAAGCAGACTTGACGTGGGAAATGTTCTGAATCCTCTTCAATCTGATGAGGACAAGAAGCTAGTTGTGGTGAAGACTCCCAATGCTGTGAACCCCCTTGTTTGGAACTACTATTATCCACTCCTTACCATTGATGTCTGGGAGCATGCTTACTTCATTGACTTTCAGAATCAGCGCCGTGATTATATATCGGTGTTCATGGATAAGCTTGTGTCTTGGGATGCAGTCAGCTCAAGACTTGAGCAAGCCAAGGCTCTAATCGAGGAGAGGGAGAGAGAGGCTGAGAGGAAAAGAAGAGATGAAGAGAAACCGACAAGCAGTGAAGCCACTCCTGAGATATTTTCTGATAGTGACGCTGACTTGGATGTCGAATGAGTAAAAATATATTCATAAGATGTAATTAGAATTATGTATCCTTTGCACTAGCTAGGTGTGGTATAGAGGCTTAATCACTTCAAGCTGCAAATTTTGTTCTATGATAAATGTTGTAATTTAGTGCTTCATAGTTCATATTGATGGGTTATTCAAAAAAAAAAAAGTTCATATTGATTGCATAAAGTCTGATTTTATGGATTGTTTTGCAAAAAACAGTTCGATTTTGATGTCTGAAAAAGAAAATCTTAGTTGGGCATTGATAGCGGTATCTCTCATGCCTATTGTATTTCATTGCCCCTCTTTCCTTGTAGTAAAATGATATGATCATTTGTTGACAGACTCTTATTGTAGAAGTAATTAGTCTTTTACGAAAAACTTCATACTATGTTATGTCATTTATATTCTCTAAGGACAAACTAGACATTTAACAGAAATGAATTTTGAGAATAAACTATC

>Glyma10g22680.4   sequence type=transcript   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCATGGAACCATGACTTCTTCTGGGAGTCCATGAAACCTGGTGGTGGTGGAAGGCCATCTGGGGAGCTTCTAAAGCTGATTGAAAGAGACTTTGGTTCATTAAAAAAATTCCTTGATGAGTTTAAGACTGCTGCTTCAGCACAATTTGGTTCAGGATGGGCATGGCTTGCATATAAAGAAAGCAGACTTGACGTGGGAAATGTTCTGAATCCTCTTCAATCTGATGAGGACAAGAAGCTAGTTGTGGTGAAGACTCCCAATGCTGTGAACCCCCTTGTTTGGAACTACTATTATCCACTCCTTACCATTGATGTCTGGGAGCATGCTTACTTCATTGACTTTCAGAATCAGCGCCGTGATTATATATCGGTGTTCATGGATAAGCTTGTGTCTTGGGATGCAGTCAGCTCAAGACTTGAGCAAGCCAAGGCTCTAATCGAGGAGAGGGAGAGAGAGGCTGAGAGGAAAAGAAGAGATGAAGAGAAACCGACAAGCAGTGAAGCCACTCCTGAGATATTTTCTGATAGTGACGCTGACTTGGATGTCGAATGAGTAAAAATATATTCATAAGATGTAATTAGAATTATGTATCCTTTGCACTAGCTAGGTGTGGTATAGAGGCTTAATCACTTCAAGCTGCAAATTTTGTTCTATGATAAATGTTGTAATTTAGTGCTTCATAGTTCATATTGATGGGTTATTCAAAAAAAAAAAAGTTCATATTGATTGCATAAAGTCTGATTTTATGGATTGTTTTGCAAAAAACAGTTCGATTTTGATGTCTGAAAAAGAAAATCTTAGTTGGGCATTGATAGCGGTATCTCTCATGCCTATTGTATTTCATTGCCCCTCTTTCCTTGTAGTAAAATGATATGATCATTTGTTGACAGACTCTTATTGTAGAAGTAATTAGTCTTTTACGAAAAACTTCATACTATGTTATGTCATTTATATTCTCTAAGGACAAACTAGACATTTAACAGAAATGAATTTTGAGAATAAACTATC

Coding sequences of Glyma10g22680

Limit To All Plant Sequences

>Glyma10g22680.2   sequence type=CDS   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGTTATCATCGCCTTCCAGTGCCGCTTCTACTTCTCTATCACCTTCCTGTTTTCTTCCTTGCTACCCTCATCATGCAGGGTTCTCTTCTGGTACCTTCAAATTCTCCAAGAAAGAGAGTAGATGTATAAGGAAAGCTGGAAGTATCACTGCAAAGTTCGAGTTGAAGCCACCACCATATCCACTGAATTCTTTGGAGCCAATTATGAGTGAGGAGACAATCGAATACCATTGGGGGAAGCATCACAGGACTTATGTAGATAATCTGAACAGGCAAATTGATGGAACAGATCTAGATGGGAATTCACTTGAGGACACTATGGTTATTTTGTACAATAAGGGTGACATTCTTCCAGCCTTCAACAATGCAGCGCAGGCATGGAACCATGACTTCTTCTGGGAGTCCATGAAACCTGGTGGTGGTGGAAGGCCATCTGGGGAGCTTCTAAAGCTGATTGAAAGAGACTTTGGTTCATTAAAAAAATTCCTTGATGAGTTTAAGACTGCTGCTTCAGCACAATTTGGTTCAGGATGGGCATGGCTTGCATATAAAGAAAGCAGACTTGACGTGGGAAATGTTCTGAATCCTCTTCAATCTGATGAGGACAAGAAGCTAGTTGTGGTGAAGACTCCCAATGCTGTGAACCCCCTTGTTTGGAACTACTATTATCCACTCCTTACCATTGATGTCTGGGAGCATGCTTACTTCATTGACTTTCAGAATCAGCGCCGTGATTATATATCGGTGTTCATGGATAAGCTTGTGTCTTGGGATGCAGTCAGCTCAAGACTTGAGCAAGCCAAGGCTCTAATCGAGGAGAGGGAGAGAGAGGCTGAGAGGAAAAGAAGAGATGAAGAGAAACCGACAAGCAGTGAAGCCACTCCTGAGATATTTTCTGATAGTGACGCTGACTTGGATGTCGAATGA

>Glyma10g22680.3   sequence type=CDS   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGTTATCATCGCCTTCCAGTGCCGCTTCTACTTCTCTATCACCTTCCTGTTTTCTTCCTTGCTACCCTCATCATGGGTTCTCTTCTGGTACCTTCAAATTCTCCAAGAAAGAGAGTAGATGTATAAGGAAAGCTGGAAGTATCACTGCAAAGTTCGAGTTGAAGCCACCACCATATCCACTGAATTCTTTGGAGCCAATTATGAGTGAGGAGACAATCGAATACCATTGGGGGAAGCATCACAGGACTTATGTAGATAATCTGAACAGGCAAATTGATGGAACAGATCTAGATGGGAATTCACTTGAGGACACTATGGTTATTTTGTACAATAAGGGTGACATTCTTCCAGCCTTCAACAATGCAGCGCAGGCATGGAACCATGACTTCTTCTGGGAGTCCATGAAACCTGGTGGTGGTGGAAGGCCATCTGGGGAGCTTCTAAAGCTGATTGAAAGAGACTTTGGTTCATTAAAAAAATTCCTTGATGAGTTTAAGACTGCTGCTTCAGCACAATTTGGTTCAGGATGGGCATGGCTTGCATATAAAGAAAGCAGACTTGACGTGGGAAATGTTCTGAATCCTCTTCAATCTGATGAGGACAAGAAGCTAGTTGTGGTGAAGACTCCCAATGCTGTGAACCCCCTTGTTTGGAACTACTATTATCCACTCCTTACCATTGATGTCTGGGAGCATGCTTACTTCATTGACTTTCAGAATCAGCGCCGTGATTATATATCGGTGTTCATGGATAAGCTTGTGTCTTGGGATGCAGTCAGCTCAAGACTTGAGCAAGCCAAGGCTCTAATCGAGGAGAGGGAGAGAGAGGCTGAGAGGAAAAGAAGAGATGAAGAGAAACCGACAAGCAGTGAAGCCACTCCTGAGATATTTTCTGATAGTGACGCTGACTTGGATGTCGAATGA

>Glyma10g22680.4   sequence type=CDS   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACCTGGTGGTGGTGGAAGGCCATCTGGGGAGCTTCTAAAGCTGATTGAAAGAGACTTTGGTTCATTAAAAAAATTCCTTGATGAGTTTAAGACTGCTGCTTCAGCACAATTTGGTTCAGGATGGGCATGGCTTGCATATAAAGAAAGCAGACTTGACGTGGGAAATGTTCTGAATCCTCTTCAATCTGATGAGGACAAGAAGCTAGTTGTGGTGAAGACTCCCAATGCTGTGAACCCCCTTGTTTGGAACTACTATTATCCACTCCTTACCATTGATGTCTGGGAGCATGCTTACTTCATTGACTTTCAGAATCAGCGCCGTGATTATATATCGGTGTTCATGGATAAGCTTGTGTCTTGGGATGCAGTCAGCTCAAGACTTGAGCAAGCCAAGGCTCTAATCGAGGAGAGGGAGAGAGAGGCTGAGAGGAAAAGAAGAGATGAAGAGAAACCGACAAGCAGTGAAGCCACTCCTGAGATATTTTCTGATAGTGACGCTGACTTGGATGTCGAATGA

Predicted protein sequences of Glyma10g22680

Limit To All Plant Sequences

>Glyma10g22680.2   sequence type=predicted peptide   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLSSPSSAASTSLSPSCFLPCYPHHAGFSSGTFKFSKKESRCIRKAGSITAKFELKPPPYPLNSLEPIMSEETIEYHWGKHHRTYVDNLNRQIDGTDLDGNSLEDTMVILYNKGDILPAFNNAAQAWNHDFFWESMKPGGGGRPSGELLKLIERDFGSLKKFLDEFKTAASAQFGSGWAWLAYKESRLDVGNVLNPLQSDEDKKLVVVKTPNAVNPLVWNYYYPLLTIDVWEHAYFIDFQNQRRDYISVFMDKLVSWDAVSSRLEQAKALIEEREREAERKRRDEEKPTSSEATPEIFSDSDADLDVE*

>Glyma10g22680.3   sequence type=predicted peptide   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLSSPSSAASTSLSPSCFLPCYPHHGFSSGTFKFSKKESRCIRKAGSITAKFELKPPPYPLNSLEPIMSEETIEYHWGKHHRTYVDNLNRQIDGTDLDGNSLEDTMVILYNKGDILPAFNNAAQAWNHDFFWESMKPGGGGRPSGELLKLIERDFGSLKKFLDEFKTAASAQFGSGWAWLAYKESRLDVGNVLNPLQSDEDKKLVVVKTPNAVNPLVWNYYYPLLTIDVWEHAYFIDFQNQRRDYISVFMDKLVSWDAVSSRLEQAKALIEEREREAERKRRDEEKPTSSEATPEIFSDSDADLDVE*

>Glyma10g22680.4   sequence type=predicted peptide   gene model=Glyma10g22680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPGGGGRPSGELLKLIERDFGSLKKFLDEFKTAASAQFGSGWAWLAYKESRLDVGNVLNPLQSDEDKKLVVVKTPNAVNPLVWNYYYPLLTIDVWEHAYFIDFQNQRRDYISVFMDKLVSWDAVSSRLEQAKALIEEREREAERKRRDEEKPTSSEATPEIFSDSDADLDVE*

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