Glyma10g22015 - SoyBase

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Report for Sequence Feature Glyma10g22015

Feature Type:	gene_model
Chromosome:	Gm10
Start:	27996191
stop:	27997223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g22015

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13235	AT	Annotation by Michelle Graham. TAIR10: ubiquitin family protein \| chr3:4271492-4274348 REVERSE LENGTH=413	SoyBase	E_val: 3.00E-12	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI		ISS
PTHR23421:SF33	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF09668	PFAM	Aspartyl protease	JGI		ISS
UniRef100_B9SX98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-damage inducible protein ddi1, putative n=1 Tax=Ricinus communis RepID=B9SX98_RICCO	SoyBase	E_val: 1.00E-11	ISS
UniRef100_UPI0002339AFB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AFB related cluster n=1 Tax=unknown RepID=UPI0002339AFB	SoyBase	E_val: 1.00E-17	ISS

Expression Patterns of Glyma10g22015

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g22015 not represented in the dataset	Glyma10g22015 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g22015 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g115800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g22015

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g22015

Limit To All Plant Sequences

>Glyma10g22015.2   sequence type=transcript   gene model=Glyma10g22015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTGATATCCTACCTTGTCAGTTCTCAGCATTTAATCTTACTGTTTTCTGGTTGGCATGATGCAGCGTTGACATAAGTTCATCCAAATCCTTTCTTCGAGGCGGACAAAAACCCAGCGTTAATGTGCAGTCTGCAGGACATACTGTTCCTGTGTTTGTTAATGGGCAATTTTCAGGGTTGGCTTTCAGGACAAGGGAGCAGAGAAGTTGCACATAAAATGGACCCGTTGACCTACGCGTTGGAACTAACAAAATTGCTCTTGTAACTTCAACTTGGAGATATTTGATGGCTTATGCAAAGGGCAACTGTTGGATTTCAGAATGTTGGTCGGCATTATGAAACATGGGAGGCAGGGTTCACTGGTCCAGTTTTGCTCCATGGTCTTGACCAAGGACAGAAAGATTTGACGAGAAACAAGTGTTCATATAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCATTGGACTGGATATGCTCCGAAAGTGTTGGTTAATTTGAAAATTGAGATGATACTGGATAAATCTGAAGTCTTGTATAACACTTTCAGATTGAATCAAATTTCGGGGTTCAACCAAAATTGTTCAATCGGATAAAATCAGAAGATTATAATTCAAG

Coding sequences of Glyma10g22015

Limit To All Plant Sequences

>Glyma10g22015.1   sequence type=CDS   gene model=Glyma10g22015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGGGCAACTGTTGGATTTCAGAATGTTGGTCGGCATTATGAAACATGGGAGGCAGGGTTCACTGGTCCAGTTTTGCTCCATGGTCTTGACCAAGGACAGAAAGATTTGACGAGAAACAAGTGTTCATATAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCATTGGACTGGATATGCTCCGAAAGTGTTGGTTAATTTGA

>Glyma10g22015.2   sequence type=CDS   gene model=Glyma10g22015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGGGCAACTGTTGGATTTCAGAATGTTGGTCGGCATTATGAAACATGGGAGGCAGGGTTCACTGGTCCAGTTTTGCTCCATGGTCTTGACCAAGGACAGAAAGATTTGACGAGAAACAAGTGTTCATATAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCATTGGACTGGATATGCTCCGAAAGTGTTGGTTAATTTGA

Predicted protein sequences of Glyma10g22015

Limit To All Plant Sequences

>Glyma10g22015.1   sequence type=predicted peptide   gene model=Glyma10g22015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRATVGFQNVGRHYETWEAGFTGPVLLHGLDQGQKDLTRNKCSYKIGSIFYPCSFLVLDSPNMEFLIGLDMLRKCWLI*

>Glyma10g22015.2   sequence type=predicted peptide   gene model=Glyma10g22015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRATVGFQNVGRHYETWEAGFTGPVLLHGLDQGQKDLTRNKCSYKIGSIFYPCSFLVLDSPNMEFLIGLDMLRKCWLI*

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