SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11700 | AT | Annotation by Michelle Graham. TAIR10: LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1419 | SoyBase | E_val: 7.00E-83 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| UniRef100_D7M9M4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M9M4_ARALL | SoyBase | E_val: 9.00E-77 | ISS |
| UniRef100_I1JUZ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JUZ1_SOYBN | SoyBase | E_val: 2.00E-130 | ISS |
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Glyma10g20860 not represented in the dataset |
Glyma10g20860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g20860.1 sequence type=CDS gene model=Glyma10g20860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATTCTAATGCAAACCTTGGAGTTCATGGACAAGGTCTGCTTAATTTATTGGGGCCAGGAGATTGGATTGAAGCACAACATTTGGTTTTATCCCTATTTTATAGTATTTCTACACGAAAGCAAAGGCTGAAGTGCTTAAATAAGAAATGCTCTCGGGAATGGAAGTTTCGAGCACACTCCAGATATCTTCTCAAAGATCCCAACGGTCAAATCATGGACAAGTGTCTTGTGAAGTTGCAGACCGAATTTCGAGAAGATCCAACGGTTAACAAAGGCTGGGCAGCGTTTTTACCGAGACAGCTTCATGTTGGGCCTGGATCTATCTTGCATGGTCCACTGGAGAATGCAACAACTGATGATGTTACTCCAAAGCTTTACTGTGACAAAGAAGAATTCCCCTATGAATTACTTCATCCCCTTGAAGATTGCAATGTGAACTCATCCTTGTCATTCACACTTCAGATCTGTAGAGTCGAGGACATCCTTGTTGAAGGCCTTATAAAAGGTTCTATTGTTCATTTCCATAGGGCAAGGACCATAAGTGTTGAATCTTCTAGAACAATATCTGCCTCTAGAATAGGCTGTACTGGTGGTTTGGGCCATGGAAATACTCTAAGTAATGGTATTGGCAGTGGTGGTGGGCATGGTGGTACCGGTGGTGAAGCATTTTATAATGATAATCATGTTGAAGGTGGCTATTCATATGGGAATGCAACCCTGCCCTGTGAACTTGGTAGTGGAAGTGGAAATGGCAACTCTACTAGAACCACAGCTGGGGGTGGTATCATAGTTGTTGGATCATTAGAACATCCTTTGTCAAGTTTGTCCATTCAAGGTTATGTAAAAGCTGATGGAGGAAATTTTGAACCGCAAATTAGAAACGAAAAATTTGCAATATTTGACAATTTTACTGGAGGTCCCGGGGGTGGATTTGGTGGCACTATACTAATGTTTCTCCATATGCTCACCATTGGGAAATCAGTTGTTCTTTCTAGTATAGGGGGATATAGCAGTTCTAATGGAAGTGGTGGTGGAGGTGGTGGAAGAATTCATTTTCATTGGTCCGACATTCCCACTGGTGATGTTTATCTGCCAATTGCTAGT
>Glyma10g20860.1 sequence type=predicted peptide gene model=Glyma10g20860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHSNANLGVHGQGLLNLLGPGDWIEAQHLVLSLFYSISTRKQRLKCLNKKCSREWKFRAHSRYLLKDPNGQIMDKCLVKLQTEFREDPTVNKGWAAFLPRQLHVGPGSILHGPLENATTDDVTPKLYCDKEEFPYELLHPLEDCNVNSSLSFTLQICRVEDILVEGLIKGSIVHFHRARTISVESSRTISASRIGCTGGLGHGNTLSNGIGSGGGHGGTGGEAFYNDNHVEGGYSYGNATLPCELGSGSGNGNSTRTTAGGGIIVVGSLEHPLSSLSIQGYVKADGGNFEPQIRNEKFAIFDNFTGGPGGGFGGTILMFLHMLTIGKSVVLSSIGGYSSSNGSGGGGGGRIHFHWSDIPTGDVYLPIAS
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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