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Report for Sequence Feature Glyma10g20860

Feature Type:gene_model
Chromosome:Gm10
Start:26442542
stop:26448215
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g20860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11700AT Annotation by Michelle Graham. TAIR10: LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1419 SoyBaseE_val: 7.00E-83ISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
UniRef100_D7M9M4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M9M4_ARALL SoyBaseE_val: 9.00E-77ISS
UniRef100_I1JUZ1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JUZ1_SOYBN SoyBaseE_val: 2.00E-130ISS

Expression Patterns of Glyma10g20860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g20860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma10g20860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g20860
>Glyma10g20860.1   sequence type=CDS   gene model=Glyma10g20860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTCTAATGCAAACCTTGGAGTTCATGGACAAGGTCTGCTTAATTTATTGGGGCCAGGAGATTGGATTGAAGCACAACATTTGGTTTTATCCCTATTTTATAGTATTTCTACACGAAAGCAAAGGCTGAAGTGCTTAAATAAGAAATGCTCTCGGGAATGGAAGTTTCGAGCACACTCCAGATATCTTCTCAAAGATCCCAACGGTCAAATCATGGACAAGTGTCTTGTGAAGTTGCAGACCGAATTTCGAGAAGATCCAACGGTTAACAAAGGCTGGGCAGCGTTTTTACCGAGACAGCTTCATGTTGGGCCTGGATCTATCTTGCATGGTCCACTGGAGAATGCAACAACTGATGATGTTACTCCAAAGCTTTACTGTGACAAAGAAGAATTCCCCTATGAATTACTTCATCCCCTTGAAGATTGCAATGTGAACTCATCCTTGTCATTCACACTTCAGATCTGTAGAGTCGAGGACATCCTTGTTGAAGGCCTTATAAAAGGTTCTATTGTTCATTTCCATAGGGCAAGGACCATAAGTGTTGAATCTTCTAGAACAATATCTGCCTCTAGAATAGGCTGTACTGGTGGTTTGGGCCATGGAAATACTCTAAGTAATGGTATTGGCAGTGGTGGTGGGCATGGTGGTACCGGTGGTGAAGCATTTTATAATGATAATCATGTTGAAGGTGGCTATTCATATGGGAATGCAACCCTGCCCTGTGAACTTGGTAGTGGAAGTGGAAATGGCAACTCTACTAGAACCACAGCTGGGGGTGGTATCATAGTTGTTGGATCATTAGAACATCCTTTGTCAAGTTTGTCCATTCAAGGTTATGTAAAAGCTGATGGAGGAAATTTTGAACCGCAAATTAGAAACGAAAAATTTGCAATATTTGACAATTTTACTGGAGGTCCCGGGGGTGGATTTGGTGGCACTATACTAATGTTTCTCCATATGCTCACCATTGGGAAATCAGTTGTTCTTTCTAGTATAGGGGGATATAGCAGTTCTAATGGAAGTGGTGGTGGAGGTGGTGGAAGAATTCATTTTCATTGGTCCGACATTCCCACTGGTGATGTTTATCTGCCAATTGCTAGT
Predicted protein sequences of Glyma10g20860
>Glyma10g20860.1   sequence type=predicted peptide   gene model=Glyma10g20860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSNANLGVHGQGLLNLLGPGDWIEAQHLVLSLFYSISTRKQRLKCLNKKCSREWKFRAHSRYLLKDPNGQIMDKCLVKLQTEFREDPTVNKGWAAFLPRQLHVGPGSILHGPLENATTDDVTPKLYCDKEEFPYELLHPLEDCNVNSSLSFTLQICRVEDILVEGLIKGSIVHFHRARTISVESSRTISASRIGCTGGLGHGNTLSNGIGSGGGHGGTGGEAFYNDNHVEGGYSYGNATLPCELGSGSGNGNSTRTTAGGGIIVVGSLEHPLSSLSIQGYVKADGGNFEPQIRNEKFAIFDNFTGGPGGGFGGTILMFLHMLTIGKSVVLSSIGGYSSSNGSGGGGGGRIHFHWSDIPTGDVYLPIAS






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