Glyma10g18620 - SoyBase

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Report for Sequence Feature Glyma10g18620

Feature Type:	gene_model
Chromosome:	Gm10
Start:	22973808
stop:	22991989
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g18620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32700	AT	Annotation by Michelle Graham. TAIR10: LEUNIG_homolog \| chr2:13867235-13871844 FORWARD LENGTH=787	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048358	GO-bp	Annotation by Michelle Graham. GO Biological Process: mucilage pectin biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
KOG0266	KOG	WD40 repeat-containing protein	JGI		ISS
PTHR12610	Panther	SINGLE STRANDED DNA BINDING PROTEIN	JGI		ISS
PTHR12610:SF11	Panther	OS04G0510200 PROTEIN (FRAGMENT)	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF08513	PFAM	LisH	JGI		ISS
UniRef100_G7I7B3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional corepressor LEUNIG n=1 Tax=Medicago truncatula RepID=G7I7B3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LA80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA80_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g18620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g18620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g102400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g18620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g18620

Limit To All Plant Sequences

>Glyma10g18620.1   sequence type=CDS   gene model=Glyma10g18620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCACAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTCATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCACAACAGATTAAAGCGAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAAATGCAAAGGAGGGATTCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCCGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCTCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGACTCGAACTCAGCAAACACCTCAGGATATCAAACCTGAAGTCAACATGGGTACCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCTAAGCCTGGAATTGTAAATGCAGGATTGAATCCGGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAGCAACAACAACAACAGCTCCTCGCACAGGTTCAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAACGGTTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCATCAACAACAGGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCGGCCAACAGTACTGGTACCGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCAACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCTGGTATATCCAAAGGTTTGATCATGTATGGTACTGATGGAGTGGGCGGTCTTGCATCTTCGACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGGAACCCTTCTGAGCATGCTACGGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAATATGGAGACATTGCAAACAGAAAGCACTCCGGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTGCGGCTGTGGGATGCTGCAGATCCAACCTTCCCTTTACATACATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAACTGAACTTTTCTGTTCTTGTGACAATAACAATGAGATTCGCTTCTGGAGTATTAGTCAATATTCTTCCACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCCGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAGATGCACACGTTACAGGGACACTCTGCCGAGGTACACTGTGTCTGTTGGGATACAAATGGAGATTACTTAGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCCTCTGGGGAGTGCATTCATGAACTTAATTCTAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCTAGCTACTCCACTCTTTTGGTTATTGGAGGATACCAGTCATTGGAACTATGGAACATGGCTGAGAATAAATGTATGACAATTCCAGCTCACGAGTGTGTGATATCTGCTCTAGCACAGTCACCACTTACAGGAATGGTTGCTTCGGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAG

Predicted protein sequences of Glyma10g18620

Limit To All Plant Sequences

>Glyma10g18620.1   sequence type=predicted peptide   gene model=Glyma10g18620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQMQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQTRTQQTPQDIKPEVNMGTMQRSLPMDPSSIYGQGGMQSKPGIVNAGLNPGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLARGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSHQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGISKGLIMYGTDGVGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFPLHTYSGHTSHVVSLDFHPKKTELFCSCDNNNEIRFWSISQYSSTRVFKGGSTQVRFQPRLGHLLAAASGSVVSLFDVETDRQMHTLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPLTGMVASASHDKSVKIWK*

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