Glyma10g18381 - SoyBase

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Report for Sequence Feature Glyma10g18381

Feature Type:	gene_model
Chromosome:	Gm10
Start:	22810520
stop:	22811160
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g18381

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21280	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:7447690-7448403 REVERSE LENGTH=237	SoyBase	E_val: 4.00E-15	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1J7C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7C1_SOYBN	SoyBase	E_val: 6.00E-72	ISS

Expression Patterns of Glyma10g18381

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g18381 not represented in the dataset	Glyma10g18381 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g18381 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma10g18381

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g18381

Limit To All Plant Sequences

>Glyma10g18381.1   sequence type=CDS   gene model=Glyma10g18381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAAACTATTTCCAATGGTCCCAATCTGTCCAGATGTATATCCGTGGAAGAGGAAAGCTTGGGATACCTCACTAGTAAGCGACCCAAGCCCGACACTACTGACCCACAACACACTGTGAGGGCTGCTGAAAACTCCATGGTGATGACGTGGTTGGTGAACTCCATGGAGGAAGACATCAGTAGTAATTATATGTGCTATTCCACAGCCAAAGAATTGTGGGATAGTATTTATGAGCTCACCTTGCAAGCTAGAGAAATCCGGCGAGGTAACAATGTGACAAGATACTTCCACTCCTTAAAGCGAGTGTGGCAAGACCTTGATCTCTTCAACAATTACAACTGGATGTCAGCCGAGGATGCCAAACACTATCAGCAGACAGTGGAAGAAGGAAGAGCATTTCAGTTTCTTGCTGGTCTCAATGAGGAGCTAGATGAAGTTCGTGGTAGAATCATTGGGATGGCAACCTTGCCTTCACTAGGTGAAATTTTTGCAGAAGTTAGAAGAGAGGAAACTCGCAGGAGTGTGATGATGGGAAAGATGAAAGTGGATCCACCTCTTGAGACCAATGCTTTGGCTGTAGAAGCTACTGCT

Predicted protein sequences of Glyma10g18381

Limit To All Plant Sequences

>Glyma10g18381.1   sequence type=predicted peptide   gene model=Glyma10g18381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQTISNGPNLSRCISVEEESLGYLTSKRPKPDTTDPQHTVRAAENSMVMTWLVNSMEEDISSNYMCYSTAKELWDSIYELTLQAREIRRGNNVTRYFHSLKRVWQDLDLFNNYNWMSAEDAKHYQQTVEEGRAFQFLAGLNEELDEVRGRIIGMATLPSLGEIFAEVRREETRRSVMMGKMKVDPPLETNALAVEATA

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