Report for Sequence Feature Glyma10g18340
Feature Type: gene_model
Chromosome: Gm10
Start: 22785054
stop: 22786446
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g18340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G28780 AT
Annotation by Michelle Graham. TAIR10: PIF1 helicase | chr5:10812907-10814173 REVERSE LENGTH=337
SoyBase E_val: 5.00E-40 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR10492 Panther
HELICASE-RELATED
JGI ISS
PF05970 PFAM
PIF1 helicase
JGI ISS
UniRef100_G7JG32 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Helicase-like protein n=1 Tax=Medicago truncatula RepID=G7JG32_MEDTR
SoyBase E_val: 2.00E-118 ISS
UniRef100_I1LA78 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LA78_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g18340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma10g18340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma10g18340
Coding sequences of Glyma10g18340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g18340.2 sequence type=CDS gene model=Glyma10g18340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATATGACAAAGAAATGTTAGCAAAACAATACAACACGGCATACCAATTGCTGACAGATGAGCAAAAAACTATTGTCGATACCATTATGTCTGTGGTTAACACTCAATCAGCTGCAATTTACTTTCTCTATGGATATGGTGGAACTGGCAAAACATTTGTTTGGACAACTTTATCATCTGGTATACGCTCCAATGGTGGAATTGTTTGTACAATTTCTTCAAGTGGAATTGCTTCATTACTATTGCCTGTTGGTCAGACTGCACATTCCAAATTTGCTATACCAGTCCCTGCAACAAAAAATTCAACATGCAATATTCATCAAGGCCGTGAGTTAGCTGAATTATTAAAGGTTACAAAACTAATAGTCTGGGATGAAGCTCCAATGTGTCACAAATTTGCATTTGAGGCACTAGATAAAAGTCTTAAAGACATCATGCAAAACAATCTGCCTTTCGGAGGGAAAATTATGGTTTTTGGGGGAGATTTCCGACAGATCTTGCCAATTGTTCCAAAAGCCACCTATCCCAGCTTGATAGATAACTACAGTGACACAGATTACTTGCAAAAAAGAGTTGTTCTTGCCTCTAAAAAAGAAATTGTTGACAAAATAAATGATTATGTCCTATCACTTATACCCAATCACGAACAAGAGTATTGCAACGCAGATAGTATTGATAAATCAGATGAATTGCTCAATCCTGTTTTTGCATTATTGCCACCTGAATTCCTATATTCATTGCAAACATCAGGTATACCTAATCATAAATTAAAACTTAAGGTTGGAACTCCAATCATGCTATTACGAAATCTCGACCAGACTGATGGCCTGTGCAATGGAACTAGGCTCATTATCACCAAACTCGGATCTAATGTGATTGAGGCTGAAGTAATTACTGGGCCTAATTTAGGAAATAGGACATACATACCCAGAATAAATATGTCTCCTTCTGAATCTCCATGGCCATTCAAACTTATAAGGAGGCAGTTTCCATTCATAGTTTCTTATGCTATGACTATAAACAAATCTTAG
Predicted protein sequences of Glyma10g18340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g18340.2 sequence type=predicted peptide gene model=Glyma10g18340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYDKEMLAKQYNTAYQLLTDEQKTIVDTIMSVVNTQSAAIYFLYGYGGTGKTFVWTTLSSGIRSNGGIVCTISSSGIASLLLPVGQTAHSKFAIPVPATKNSTCNIHQGRELAELLKVTKLIVWDEAPMCHKFAFEALDKSLKDIMQNNLPFGGKIMVFGGDFRQILPIVPKATYPSLIDNYSDTDYLQKRVVLASKKEIVDKINDYVLSLIPNHEQEYCNADSIDKSDELLNPVFALLPPEFLYSLQTSGIPNHKLKLKVGTPIMLLRNLDQTDGLCNGTRLIITKLGSNVIEAEVITGPNLGNRTYIPRINMSPSESPWPFKLIRRQFPFIVSYAMTINKS*