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Report for Sequence Feature Glyma10g18340

Feature Type:gene_model
Chromosome:Gm10
Start:22785054
stop:22786446
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G28780AT Annotation by Michelle Graham. TAIR10: PIF1 helicase | chr5:10812907-10814173 REVERSE LENGTH=337 SoyBaseE_val: 5.00E-40ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10492Panther HELICASE-RELATED JGI ISS
PF05970PFAM PIF1 helicase JGI ISS
UniRef100_G7JG32UniRef Annotation by Michelle Graham. Most informative UniRef hit: Helicase-like protein n=1 Tax=Medicago truncatula RepID=G7JG32_MEDTR SoyBaseE_val: 2.00E-118ISS
UniRef100_I1LA78UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LA78_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g18340.2   sequence type=CDS   gene model=Glyma10g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATGACAAAGAAATGTTAGCAAAACAATACAACACGGCATACCAATTGCTGACAGATGAGCAAAAAACTATTGTCGATACCATTATGTCTGTGGTTAACACTCAATCAGCTGCAATTTACTTTCTCTATGGATATGGTGGAACTGGCAAAACATTTGTTTGGACAACTTTATCATCTGGTATACGCTCCAATGGTGGAATTGTTTGTACAATTTCTTCAAGTGGAATTGCTTCATTACTATTGCCTGTTGGTCAGACTGCACATTCCAAATTTGCTATACCAGTCCCTGCAACAAAAAATTCAACATGCAATATTCATCAAGGCCGTGAGTTAGCTGAATTATTAAAGGTTACAAAACTAATAGTCTGGGATGAAGCTCCAATGTGTCACAAATTTGCATTTGAGGCACTAGATAAAAGTCTTAAAGACATCATGCAAAACAATCTGCCTTTCGGAGGGAAAATTATGGTTTTTGGGGGAGATTTCCGACAGATCTTGCCAATTGTTCCAAAAGCCACCTATCCCAGCTTGATAGATAACTACAGTGACACAGATTACTTGCAAAAAAGAGTTGTTCTTGCCTCTAAAAAAGAAATTGTTGACAAAATAAATGATTATGTCCTATCACTTATACCCAATCACGAACAAGAGTATTGCAACGCAGATAGTATTGATAAATCAGATGAATTGCTCAATCCTGTTTTTGCATTATTGCCACCTGAATTCCTATATTCATTGCAAACATCAGGTATACCTAATCATAAATTAAAACTTAAGGTTGGAACTCCAATCATGCTATTACGAAATCTCGACCAGACTGATGGCCTGTGCAATGGAACTAGGCTCATTATCACCAAACTCGGATCTAATGTGATTGAGGCTGAAGTAATTACTGGGCCTAATTTAGGAAATAGGACATACATACCCAGAATAAATATGTCTCCTTCTGAATCTCCATGGCCATTCAAACTTATAAGGAGGCAGTTTCCATTCATAGTTTCTTATGCTATGACTATAAACAAATCTTAG

>Glyma10g18340.2   sequence type=predicted peptide   gene model=Glyma10g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYDKEMLAKQYNTAYQLLTDEQKTIVDTIMSVVNTQSAAIYFLYGYGGTGKTFVWTTLSSGIRSNGGIVCTISSSGIASLLLPVGQTAHSKFAIPVPATKNSTCNIHQGRELAELLKVTKLIVWDEAPMCHKFAFEALDKSLKDIMQNNLPFGGKIMVFGGDFRQILPIVPKATYPSLIDNYSDTDYLQKRVVLASKKEIVDKINDYVLSLIPNHEQEYCNADSIDKSDELLNPVFALLPPEFLYSLQTSGIPNHKLKLKVGTPIMLLRNLDQTDGLCNGTRLIITKLGSNVIEAEVITGPNLGNRTYIPRINMSPSESPWPFKLIRRQFPFIVSYAMTINKS*







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