Glyma10g17980 - SoyBase

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Report for Sequence Feature Glyma10g17980

Feature Type:	gene_model
Chromosome:	Gm10
Start:	22223335
stop:	22223772
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g17980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66150	AT	Annotation by Michelle Graham. TAIR10: transmembrane kinase 1 \| chr1:24631503-24634415 FORWARD LENGTH=942	SoyBase	E_val: 2.00E-30	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004675	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
UniRef100_C6ZRR4	UniRef	Annotation by Michelle Graham. Best UniRef hit: NAK-type protein kinase n=1 Tax=Glycine max RepID=C6ZRR4_SOYBN	SoyBase	E_val: 6.00E-33	ISS
UniRef100_C6ZRR4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAK-type protein kinase n=1 Tax=Glycine max RepID=C6ZRR4_SOYBN	SoyBase	E_val: 6.00E-33	ISS

Expression Patterns of Glyma10g17980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g17980 not represented in the dataset	Glyma10g17980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g17980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma10g17980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g17980

Limit To All Plant Sequences

>Glyma10g17980.1   sequence type=CDS   gene model=Glyma10g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTGTTACACTAACGCTTTCACGGGTCCCCTGCCTGATTTTTCTGCCCTGAAGGATTTGGAAGTTCCGAGCTTGAGTCATAACAAGTTCACTGGTTCTGTTCCAGCTTCTTTGTTGGGTCTTCCGTGGCTCAAAATTGTGAACTTGTCTGGTAACTTGTTTCAGGGACTAATGACTCCCCCTGGTTCCAATAATTTTCGTTTGCCCAGTTCTGGTGATTGTGATCCTAGAGTGGAGCTTCTGCTTTACGTGATTGGTCTTACGGAGTATCATCCGATCTTTGCTAAGAATTGGAAGGGCAATGATCCTTGTGTTGTTTGGATAGGGATTAGCTATCGTCTTGATAGAATAATCGTCATTGATTTTGCCGACACGAGAAAATTTGAGTAA

Predicted protein sequences of Glyma10g17980

Limit To All Plant Sequences

>Glyma10g17980.1   sequence type=predicted peptide   gene model=Glyma10g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCYTNAFTGPLPDFSALKDLEVPSLSHNKFTGSVPASLLGLPWLKIVNLSGNLFQGLMTPPGSNNFRLPSSGDCDPRVELLLYVIGLTEYHPIFAKNWKGNDPCVVWIGISYRLDRIIVIDFADTRKFE*

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