SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G41140 | AT | Annotation by Michelle Graham. TAIR10: CDPK-related kinase 1 | chr2:17150492-17153378 FORWARD LENGTH=576 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004683 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0004723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-dependent protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| PTHR24349 | Panther | SERINE/THREONINE-PROTEIN KINASE | JGI | ISS | |
| PTHR24349:SF13 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_I1LA75 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LA75_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HT01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase-like protein n=1 Tax=Medicago truncatula RepID=Q2HT01_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma10g17870 not represented in the dataset |
Glyma10g17870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g096600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g17870.1 sequence type=CDS gene model=Glyma10g17870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCAGAATTTTCTTTTCACTTCTAAGGATGACAAGTCCACGCTGAAGGCCATTGATTTTGGGTTGTCTGACTATGTAAAGCCAGATGAGAGGTTGAATGATATTGTGGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAGGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGCGGAAGCCGTCCCTTTTGGGCCCGGACAGAATCTGGTATATTTCGGGCTGTACTGAAGGCAGATCCAAGTTTTGATGAGGCTCCTTGGCCTTCTTTATCGGTTGATGCCAAAGATTTTGTAAAGAGGTTGTTGAATAAGGATTATCGTAAAAGATTGACTGCGGCTCAGGCACTAAGTCATCCATGGCTGGTGAATCATCATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCTTACATTTGCTCGTCTTCGTTGCGCAAATCTGCTTTACGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTCTGTTAGGGCCAAACAAAAGTGGATTAATTTCTATGCAGAACTTTAAGACGGCTGTTTTGAGGAGCTCTACAGATGCCTCAAAGGATTCACGGGTCTTAGATTATGTCAGTATGGTTAGTTCTATCCAATATAGGAAATTAGATTTTGAGGAGTTTTGTGCTGCTGCTATAAGTGTGCACCAACTCGAGGGAATGGAGACCTGGGAGCAACATGCAAGGCATGCCTATGAGCTTTTTAAAAAGGAAGGAAATAGACCAATTATGATTGAAGAACTTGCCTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAGGATTGGATAAGGCACTCAGATGGAAAGCTTAGTTTCTTGGGATTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGCGCATTTCAGAAGGCTTGA
>Glyma10g17870.1 sequence type=predicted peptide gene model=Glyma10g17870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLQNFLFTSKDDKSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSVDAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDMRIPLDMIIHKLVKAYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVSMVSSIQYRKLDFEEFCAAAISVHQLEGMETWEQHARHAYELFKKEGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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