Glyma10g17850 - SoyBase

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Report for Sequence Feature Glyma10g17850

Feature Type:	gene_model
Chromosome:	Gm10
Start:	22201786
stop:	22205304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g17850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56760	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr3:21020661-21023756 REVERSE LENGTH=577	SoyBase	E_val: 4.00E-135	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24349	Panther	SERINE/THREONINE-PROTEIN KINASE	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9S840	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S840_RICCO	SoyBase	E_val: 3.00E-141	ISS
UniRef100_I1LA74	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA74_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g17850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g17850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g096800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g17850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g17850

Limit To All Plant Sequences

>Glyma10g17850.1   sequence type=CDS   gene model=Glyma10g17850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATCTGCCATGGAAAACCCATTGAAACCCAACAAAGTCAAAGAGAGACCAACACCCCATCAGAATTCCCAAGTGAACTCCAAACTCCCACAAAAACCCCCAAATCCTCATCAAAATTCCCATTCTACAGCCCAAGCCCCCTTCCCAGCTGGTTCAAAAACTCCCCTTCCTCAAACTCAAACCCTAGCAGCGTCAGCTCAACACCCTTGCGGATCTTCAAGCGCCCCTTCCCTCCGCCCTCTCCGGCCAAGCACATTCGCGCGCTGCTCGCCCGCCGCCACGGTTCCGTCAAGCCGAACGAAGCCTCCATACCGGAGGCCAGCGAGTGTGAGCTCGGCCTCGACAAGAGCTTTGGCTTTGCTAAGCAGTTTTCGGCTCATTATGAGCTCAGTGACGAAGTCGGCCGGGGGCATTTTGGGTATACCTGCTCCGCTAAAGGCAAGAAAGGGGCGTTCAAGGGCTTAAATGTTGCTGTCAAAGTCATTCCTAAAGCCAAGATGACCACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTGAAGATATTGAGGGCTTTAACAGGACATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTGTGCAAAGGAGGGGAATTGCTAGATAGGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCCAGAGTAGTTATGATCCAAATATTGAGTGTGGTAGCTTTTTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGGTGATTAAGTTATAA

Predicted protein sequences of Glyma10g17850

Limit To All Plant Sequences

>Glyma10g17850.1   sequence type=predicted peptide   gene model=Glyma10g17850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGICHGKPIETQQSQRETNTPSEFPSELQTPTKTPKSSSKFPFYSPSPLPSWFKNSPSSNSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEASECELGLDKSFGFAKQFSAHYELSDEVGRGHFGYTCSAKGKKGAFKGLNVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDRILSRGGKYSEEDARVVMIQILSVVAFCHLQGVVHRDLKPEVIKL*

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