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Report for Sequence Feature Glyma10g17590

Feature Type:gene_model
Chromosome:Gm10
Start:21357424
stop:21365721
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g17590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26300AT Annotation by Michelle Graham. TAIR10: Arginyl-tRNA synthetase, class Ic | chr4:13308400-13313109 REVERSE LENGTH=642 SoyBaseE_val: 0ISS
GO:0006164GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process SoyBaseN/AISS
GO:0006418GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation SoyBaseN/AISS
GO:0006420GO-bp Annotation by Michelle Graham. GO Biological Process: arginyl-tRNA aminoacylation SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004812GO-mf Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity SoyBaseN/AISS
GO:0004814GO-mf Annotation by Michelle Graham. GO Molecular Function: arginine-tRNA ligase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG4426 KOG Arginyl-tRNA synthetase JGI ISS
PTHR11956Panther ARGINYL-TRNA SYNTHETASE JGI ISS
PF00750PFAM tRNA synthetases class I (R) JGI ISS
PF05746PFAM DALR anticodon binding domain JGI ISS
UniRef100_B2G3G6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arginyl-tRNA synthetase n=1 Tax=Canavalia ensiformis RepID=B2G3G6_CANEN SoyBaseE_val: 0ISS
UniRef100_I1LA73UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LA73_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g17590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g17590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g102900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g17590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g17590
>Glyma10g17590.1   sequence type=CDS   gene model=Glyma10g17590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAATCGATGGTATCAACTCGTGGGCGCCTCGACTTCCAGTCAAGAGGGCTTTGATTGATTTTTCCTCTCCTAATATAGCAAAGGAAATGCATGTTGGCCACCTGAGATCTACCATTATTGGTGATACATTAGCTCGCATGCTTGAATTTTCACATGTAGAATGTGTAATCCGTAGAAATCATGTTGGTGACTGGGGAACACAGTTTGGGATGCTGATTACATACCTCTTTGAAAAATTTCCAAACCCAGACAATGTTAGTGAAGCAGACATTGGAGATCTTCAGGCATTCTATAAGGCTTCAAAACTGAGGTTTGATAGTGATCCTGAGTTTAAGTTGAGGGCACAACAGGCAGTGGTCAGTCTCCAGAGTGGAGAAATCAAGTATCACAAGGCATGGCAACAAATTTGTGAAGTTAGTAGGGCTGAATTTGATAAAGTCTATCAATGTCTTGGAATTCAATTGGAGGAAAGGGGAGAGAGCTTCTATAATCCATATATTCCTGGGGTTTTGGAGAAGCTGGATAATTTAGGACTGATTGAAGAGAGTGATGGTGCGCGTGTGATTTATGTTGAGGGTGTAGACATACCACTTATTGCTGTGAAAAGAGATGGTGGCTACAACTATTTTACAACTGATCTAGCATCACTTTGGTATCGTCTAAATGAAGAAAAACTTGAATGGATTGTATATGTTACAGATATTGGGCAGCAACAGCACTTTGATATGCTATTTAAGGCCTATAGGCGTGCAGGTTGGTTACCAAAGGATGAGAATGCGTATCCAAAATGTACTCATATAGGTTTTGGTCTTGTTCTTGGGGAAGATGGAAAACGATTTCGGACTCGCAGCAGTGAGGTTGTTCGATTAGTTGATTTACTTGATGAAGCTAAAAGGCGCTGTAAAATTGCCATTCTTGAACGTGATACAACTAAAGATTGGTCTGAGGAGGAGATCGAGAAAACATCCGAGGCAGTTGGTTATGGGGCTGTTAAGTATGCTGATTTGAAGATCAACAGATTAACAAATTACACCTTCAACTTTGATCAGATGCTTAATGACAAGGGGAATACTGCTGTTTATTTGCTGTATGCACATGCTAGGATCTGTTCCATTATCAGGAAATCTGGTAAAGACATAGAAGAAGTAAAGAGAAATGGGAAAATAGTGTTGGATCATGAAGATGAACGTGCATTGGGGCTTCATTTGCTACAATTTCCTGAGGTTTTTGAGGAGGCATGCACCAATTTGTTGCCCAATTTCTTGTGTGAATACCTTTACAATTTGGCAGAAATCTTTACAAAAAAATTTTACGCTAATTGTCAGGTTGTGGGGTCGCCTGAGGAAACCAGTAGACTCTTGCTATGTGAAGCAACGGTGACTGTGATGAGACACTGCTTTTATCTCCTTGGAATTGAACATGTATACAGGCTATGA
Predicted protein sequences of Glyma10g17590
>Glyma10g17590.1   sequence type=predicted peptide   gene model=Glyma10g17590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIDGINSWAPRLPVKRALIDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSHVECVIRRNHVGDWGTQFGMLITYLFEKFPNPDNVSEADIGDLQAFYKASKLRFDSDPEFKLRAQQAVVSLQSGEIKYHKAWQQICEVSRAEFDKVYQCLGIQLEERGESFYNPYIPGVLEKLDNLGLIEESDGARVIYVEGVDIPLIAVKRDGGYNYFTTDLASLWYRLNEEKLEWIVYVTDIGQQQHFDMLFKAYRRAGWLPKDENAYPKCTHIGFGLVLGEDGKRFRTRSSEVVRLVDLLDEAKRRCKIAILERDTTKDWSEEEIEKTSEAVGYGAVKYADLKINRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEVKRNGKIVLDHEDERALGLHLLQFPEVFEEACTNLLPNFLCEYLYNLAEIFTKKFYANCQVVGSPEETSRLLLCEATVTVMRHCFYLLGIEHVYRL*






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