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Report for Sequence Feature Glyma10g17561

Feature Type:gene_model
Chromosome:Gm10
Start:21210074
stop:21215805
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g17561
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57530AT Annotation by Michelle Graham. TAIR10: calcium-dependent protein kinase 32 | chr3:21296898-21299351 REVERSE LENGTH=538 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007154GO-bp Annotation by Michelle Graham. GO Biological Process: cell communication SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004683GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity SoyBaseN/AISS
GO:0004698GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium-dependent protein kinase C activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0032 KOG Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily JGI ISS
PTHR24349Panther SERINE/THREONINE-PROTEIN KINASE JGI ISS
PTHR24349:SF13Panther JGI ISS
PF00036PFAM EF hand JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_Q7XZK4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent calmodulin-independent protein kinase isoform 2 n=1 Tax=Cicer arietinum RepID=Q7XZK4_CICAR SoyBaseE_val: 0ISS
UniRef100_UPI000233C398UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C398 related cluster n=1 Tax=unknown RepID=UPI000233C398 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g17561
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g17561 not represented in the dataset
Glyma10g17561 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g17561
ParalogEvidenceComments
Glyma02g31490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g17561 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g103100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g17561
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma10g17561
>Glyma10g17561.2   sequence type=transcript   gene model=Glyma10g17561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTAAACAGGACAAAATTAGAAACAACCAGCTCATCGTGCCTTCCTTTTCTACGGAGAGAAAATCCCATTTAATTTTAAAGAGAGAGAAAAAAACACAACACACAGAGACAGAAAAAAAAAAAAAAGCATAGAAAAGGAGGGTTAAGGAAGAAGAAGAAGGAGAAGCCGGACCCAAGCGTCCGCGTTTCATCTTTCACCTCCTTCCTCCTAACCCTCCCTTAAATCATAATCCCATATTCATATATTGCATTCGAGCTATTGTTTGTTTTTACGTACACATGTCGTAGTAGTTCATGATTTTGACCTTAAAATAATTCTCATTTTGTTTTCAAGGTATTTCTACCTCAAGTTTGTCACATTGTTAGGTTTATTATATTCGAGATATTGTCCGTCTTATATTCATCATATACGATATACGAGAGACATTGTCTGCTCCTTAGCTTCATCGTCGTGTTTTGAGGTATTGTCTGCTTTGACGCTCGACGACATTGGATCATCATTTCTATGGGTAACTGCTGCGTTGTGCCTTCCGGTCAAACAAGAAAAGAAAAAAAACAAAAGAAGAAGTGGAATCCCTACGAGGACGGGTGGGGGAAGAAGCTGGTGGTGCTGACGGAGCCCACGGGCCGGGACATCGGGCTGCGTTACGACCTGGGCCGGGAGCTGGGCCGAGGTGAGTTCGGGGTAACATATCTGTGCCAAGACAGGGAGACGAAGGAGGAGTTAGCATGCAAGAGCATTTCAAAGAAGAAGCTTCGAACCGCGATAGATATCGAGGACGTGAGGAGGGAGGTGGAGATCATGCGGCTCTTGCCTAAACACCCGAACGTCGTGTCGTTGAAGGACACATACGAAGATGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGTATCGTGGCGCGTGGCCACTACACCGAGCGCGCCGCCGCCACCGTCACCAGAACCATTGTCGAAGTCGTGCAGATGTGCCACAAACATGGCGTGATGCATCGTGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAAACAGCACCTTTGAAAGCTATTGACTTTGGATTGTCGGTTTTATTCAAACCAGGTGAAAGATTTAACGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTAATTCTCTACATCTTACTTTGTGGCGTCCCACCGTTTTGGGCAGAAACTGAAAAGGGAGTTGCTCAAGCTATTATTCGATCTGTTGTTGATTTTAAAAGGGAGCCATGGCCGAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCAAAGTGCCGTCTTACTGCACAAGAAGTGTTAGATCATCCGTGGTTACAGAATGAAAAGAAAGCCCCTAATGTTTCATTGGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGGAGAGTTTTTGTCTTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAGCTAATGGATACAAGCAATAAAGGCAAGATTAACATGGATGAGCTGCGAGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGGGGATGTCCAAATACTTATGGATGCTGGTGATGTAGACAACGATGGGTACCTAGATTATGGCGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATAGACAAGGATGAGCACCTTCACAAAGCCTTCCAATTTTTCGATAAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGCCTTAGTTGATGAGATTGAAACAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAAGCAGGCACAGATTGGAGGAAAGCATCGAGGCAGTATTCAAGAGAGAGGTTCTCTAGCTTAAGTCAGAAATTGATCAAGGACGGATCTTTGCAATTGAACAATGATGACGGTAGTAGACTTTATTAGAAGAAATAATAACAAAGTTGTTTTACTCGGGCAAAGCCAAAGGAGAAGAGTCATCATCCCTTTATTCTTTTCCCCTTCATTGTTATATTCTTTTCTCTAATTTTTTCTTATATACTTTCGAGGGGTTAGTTAAATTAAATATAGGGTATATATATATATATGCATGAGAAGTAAGTAATGTCTGTGGCTTGCAGAAGTTAATGGAGAAAGGAGAAGGCGGAGGATTGGACAAGTCTTCAATGTGTGACTGTAAATATTTTCCAATAGTCACACTTATATTATAAATTTATAACCATTTGACATATTTAAAGAAATTGTACCTCTTTATTATTATTATGCACA
Coding sequences of Glyma10g17561
>Glyma10g17561.1   sequence type=CDS   gene model=Glyma10g17561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAACTGCTGCGTTGTGCCTTCCGGTCAAACAAGAAAAGAAAAAAAACAAAAGAAGAAGTGGAATCCCTACGAGGACGGGTGGGGGAAGAAGCTGGTGGTGCTGACGGAGCCCACGGGCCGGGACATCGGGCTGCGTTACGACCTGGGCCGGGAGCTGGGCCGAGGTGAGTTCGGGGTAACATATCTGTGCCAAGACAGGGAGACGAAGGAGGAGTTAGCATGCAAGAGCATTTCAAAGAAGAAGCTTCGAACCGCGATAGATATCGAGGACGTGAGGAGGGAGGTGGAGATCATGCGGCTCTTGCCTAAACACCCGAACGTCGTGTCGTTGAAGGACACATACGAAGATGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGTATCGTGGCGCGTGGCCACTACACCGAGCGCGCCGCCGCCACCGTCACCAGAACCATTGTCGAAGTCGTGCAGATGTGCCACAAACATGGCGTGATGCATCGTGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAAACAGCACCTTTGAAAGCTATTGACTTTGGATTGTCGGTTTTATTCAAACCAGGTGAAAGATTTAACGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTAATTCTCTACATCTTACTTTGTGGCGTCCCACCGTTTTGGGCAGAAACTGAAAAGGGAGTTGCTCAAGCTATTATTCGATCTGTTGTTGATTTTAAAAGGGAGCCATGGCCGAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCAAAGTGCCGTCTTACTGCACAAGAAGTGTTAGATCATCCGTGGTTACAGAATGAAAAGAAAGCCCCTAATGTTTCATTGGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGGAGAGTTTTTGTCTTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAGCTAATGGATACAAGCAATAAAGGCAAGATTAACATGGATGAGCTGCGAGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGGGGATGTCCAAATACTTATGGATGCTGGTGATGTAGACAACGATGGGTACCTAGATTATGGCGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATAGACAAGGATGAGCACCTTCACAAAGCCTTCCAATTTTTCGATAAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGCCTTAGTTGATGAGATTGAAACAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAAGCAGGCACAGATTGGAGGAAAGCATCGAGGCAGTATTCAAGAGAGAGGTTCTCTAGCTTAAGTCAGAAATTGATCAAGGACGGATCTTTGCAATTGAACAATGATGACGGTAGTAGACTTTATTAG

>Glyma10g17561.2   sequence type=CDS   gene model=Glyma10g17561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAACTGCTGCGTTGTGCCTTCCGGTCAAACAAGAAAAGAAAAAAAACAAAAGAAGAAGTGGAATCCCTACGAGGACGGGTGGGGGAAGAAGCTGGTGGTGCTGACGGAGCCCACGGGCCGGGACATCGGGCTGCGTTACGACCTGGGCCGGGAGCTGGGCCGAGGTGAGTTCGGGGTAACATATCTGTGCCAAGACAGGGAGACGAAGGAGGAGTTAGCATGCAAGAGCATTTCAAAGAAGAAGCTTCGAACCGCGATAGATATCGAGGACGTGAGGAGGGAGGTGGAGATCATGCGGCTCTTGCCTAAACACCCGAACGTCGTGTCGTTGAAGGACACATACGAAGATGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGTATCGTGGCGCGTGGCCACTACACCGAGCGCGCCGCCGCCACCGTCACCAGAACCATTGTCGAAGTCGTGCAGATGTGCCACAAACATGGCGTGATGCATCGTGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAAACAGCACCTTTGAAAGCTATTGACTTTGGATTGTCGGTTTTATTCAAACCAGGTGAAAGATTTAACGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTAATTCTCTACATCTTACTTTGTGGCGTCCCACCGTTTTGGGCAGAAACTGAAAAGGGAGTTGCTCAAGCTATTATTCGATCTGTTGTTGATTTTAAAAGGGAGCCATGGCCGAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCAAAGTGCCGTCTTACTGCACAAGAAGTGTTAGATCATCCGTGGTTACAGAATGAAAAGAAAGCCCCTAATGTTTCATTGGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGGAGAGTTTTTGTCTTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAGCTAATGGATACAAGCAATAAAGGCAAGATTAACATGGATGAGCTGCGAGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGGGGATGTCCAAATACTTATGGATGCTGGTGATGTAGACAACGATGGGTACCTAGATTATGGCGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATAGACAAGGATGAGCACCTTCACAAAGCCTTCCAATTTTTCGATAAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGCCTTAGTTGATGAGATTGAAACAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAAGCAGGCACAGATTGGAGGAAAGCATCGAGGCAGTATTCAAGAGAGAGGTTCTCTAGCTTAAGTCAGAAATTGATCAAGGACGGATCTTTGCAATTGAACAATGATGACGGTAGTAGACTTTATTAG
Predicted protein sequences of Glyma10g17561
>Glyma10g17561.1   sequence type=predicted peptide   gene model=Glyma10g17561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCCVVPSGQTRKEKKQKKKWNPYEDGWGKKLVVLTEPTGRDIGLRYDLGRELGRGEFGVTYLCQDRETKEELACKSISKKKLRTAIDIEDVRREVEIMRLLPKHPNVVSLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAATVTRTIVEVVQMCHKHGVMHRDLKPENFLFGNKKETAPLKAIDFGLSVLFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEKGVAQAIIRSVVDFKREPWPKVSDNAKDLVKKMLDPDPKCRLTAQEVLDHPWLQNEKKAPNVSLGETVRSRLMQFSVMNKLKKRALRVIGEFLSLEEAAGIKEGFQLMDTSNKGKINMDELRVGLHKLGHQIPDGDVQILMDAGDVDNDGYLDYGEFVAISIHLRKIDKDEHLHKAFQFFDKNQSGYIEIEELHNALVDEIETNSEEVINAIMHDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFSSLSQKLIKDGSLQLNNDDGSRLY*

>Glyma10g17561.2   sequence type=predicted peptide   gene model=Glyma10g17561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCCVVPSGQTRKEKKQKKKWNPYEDGWGKKLVVLTEPTGRDIGLRYDLGRELGRGEFGVTYLCQDRETKEELACKSISKKKLRTAIDIEDVRREVEIMRLLPKHPNVVSLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAATVTRTIVEVVQMCHKHGVMHRDLKPENFLFGNKKETAPLKAIDFGLSVLFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEKGVAQAIIRSVVDFKREPWPKVSDNAKDLVKKMLDPDPKCRLTAQEVLDHPWLQNEKKAPNVSLGETVRSRLMQFSVMNKLKKRALRVIGEFLSLEEAAGIKEGFQLMDTSNKGKINMDELRVGLHKLGHQIPDGDVQILMDAGDVDNDGYLDYGEFVAISIHLRKIDKDEHLHKAFQFFDKNQSGYIEIEELHNALVDEIETNSEEVINAIMHDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFSSLSQKLIKDGSLQLNNDDGSRLY*






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