SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57510 | AT | Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:21283546-21285842 REVERSE LENGTH=431 | SoyBase | E_val: 4.00E-152 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009830 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0009901 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther dehiscence | SoyBase | N/A | ISS |
| GO:0010047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit dehiscence | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004650 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity | SoyBase | N/A | ISS |
| PF00295 | PFAM | Glycosyl hydrolases family 28 | JGI | ISS | |
| UniRef100_C3SAR8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Diospyros kaki RepID=C3SAR8_DIOKA | SoyBase | E_val: 0 | ISS |
| UniRef100_Q944B5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Dehiscence-related endopolygalaturonase n=1 Tax=Glycine max RepID=Q944B5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g17550 not represented in the dataset |
Glyma10g17550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g31540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g103200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g17550.1 sequence type=CDS gene model=Glyma10g17550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCTCCAAAGGCATCATCTCTCGTTACTTTTTATCATGTTTTCTTTTGTTGCTTGTCACAGCACCGTGCTACTTGATGGTGGTGGTACATTCAAGGACTTTATCAAACAAAAAAGTACAGATGTTATGAGCATAAGGAAATTTGGCAAATTGGGTGACATTTCTTCTTCGCTTAAAACGGTTAACGTCAATGATTATGGAGCTCGCGGAGATGGCAAAACTGATGACACTCAGGCATTCAAGGAAGCTTGGGAAGTAGCATGTTCTTCTGGGGGAGCAGTTTTTGTGGTGCCTCGGAAAAATTATCTACTCAAGCCATTCACATTTTCTGGCCCTTGCGAATCCGACATAGAAGTTCAGATTTCTGGAATCATTGAAGCATCAGAAAACCTATCAGATTACAGCGAAGACCTAACCCACTGGCTTGTTTTCGACAGTATTGAGAAACTATCAGTTAAAGGTGGTGGAACCATCGATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAGTTAACGAAAAGCTTCCTTGCAAGAATGCCCCTACGGCATTGACTTTCTACAAGTGCAAAGATTTGACAGTGGAGGATTTGACGATAAAAAATGGCCAACAGATGCAAGTTTCATTCCAAAACTCTGAGAATGTTCAAGTTTCTGATCTCACAGTGACAGCACCGGGGGATAGCCCTAACACCGATGGAATCCATGTCACAAACACCCAAAACATTCAAATCTCTAACTCCGTTATAGGAACTGGTGATGATTGTATATCAATTGTAAGTGGATCCAAGGATGTACTAGCCACAGACATAATCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTGGGGGCTGAGGGATCCAAGGACTTCGTTTCAGGAATAACGGTGAAAGGAGCTCAGCTTTCTGGAACTACAAACGGACTAAGAATTAAGACATGGCAGGGAGGATCAGGAAGTGCAAGCAACATCCAATTTCAGAACATTCAAATGGACAATGTGGCCAACCCCATAATAATTGACCAAAACTACTGTGATCAAGAGACACCATGCGAAGAACAAACATCTGCAGTTCAGATTAGGAATGTGTTGTACCAAAACATAAGTGGCACTAGTGCTTCTGATGTGGGTGTGCAATTTGATTGCAGTAAGAAATTTCCATGCCAGGGGATAGTGTTGCAGAACATAGACCTGAAACTTGAAGGTGGAGGAGAGGCCAAGGCTTCATGCAACAGTGTTGAATTGTCCTACAGAGGAGATGTTAACCCTCTCTGCCCATAG
>Glyma10g17550.1 sequence type=predicted peptide gene model=Glyma10g17550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALQRHHLSLLFIMFSFVACHSTVLLDGGGTFKDFIKQKSTDVMSIRKFGKLGDISSSLKTVNVNDYGARGDGKTDDTQAFKEAWEVACSSGGAVFVVPRKNYLLKPFTFSGPCESDIEVQISGIIEASENLSDYSEDLTHWLVFDSIEKLSVKGGGTIDGNGNIWWQNSCKVNEKLPCKNAPTALTFYKCKDLTVEDLTIKNGQQMQVSFQNSENVQVSDLTVTAPGDSPNTDGIHVTNTQNIQISNSVIGTGDDCISIVSGSKDVLATDIICGPGHGISIGSLGAEGSKDFVSGITVKGAQLSGTTNGLRIKTWQGGSGSASNIQFQNIQMDNVANPIIIDQNYCDQETPCEEQTSAVQIRNVLYQNISGTSASDVGVQFDCSKKFPCQGIVLQNIDLKLEGGGEAKASCNSVELSYRGDVNPLCP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
