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Report for Sequence Feature Glyma10g17530

Feature Type:gene_model
Chromosome:Gm10
Start:21110480
stop:21111604
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g17530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08780AT Annotation by Michelle Graham. TAIR10: ABI3-interacting protein 3 | chr1:2809925-2811126 REVERSE LENGTH=129 SoyBaseE_val: 5.00E-23ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016272GO-cc Annotation by Michelle Graham. GO Cellular Compartment: prefoldin complex SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
GO:0051087GO-mf Annotation by Michelle Graham. GO Molecular Function: chaperone binding SoyBaseN/AISS
PTHR21100Panther FAMILY NOT NAMED JGI ISS
PTHR21100:SF6Panther SUBFAMILY NOT NAMED JGI ISS
PF01920PFAM Prefoldin subunit JGI ISS
UniRef100_B9SZ63UniRef Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin subunit, putative n=1 Tax=Ricinus communis RepID=B9SZ63_RICCO SoyBaseE_val: 2.00E-22ISS
UniRef100_I1LA68UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA68_SOYBN SoyBaseE_val: 2.00E-34ISS

Expression Patterns of Glyma10g17530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g17530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma10g17530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g17530
>Glyma10g17530.1   sequence type=CDS   gene model=Glyma10g17530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAAGGTTTTTGCTCATGTGCCAAAGGACGAAGTTGAGAATAGGATAGAACAGATAAACAAGGTGACAAGCCAGAAATTAGAAAAACTTGAAGAGGAGAAAGAATCTATTCTTGCTCAGATGGCTGAACTCAAGAAAATTTTGTATGCGAAGTTCAATGACTCGATCAATCTTGAGGAGGATTAG
Predicted protein sequences of Glyma10g17530
>Glyma10g17530.1   sequence type=predicted peptide   gene model=Glyma10g17530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKVFAHVPKDEVENRIEQINKVTSQKLEKLEEEKESILAQMAELKKILYAKFNDSINLEED*






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