Glyma10g17530 - SoyBase

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Report for Sequence Feature Glyma10g17530

Feature Type:	gene_model
Chromosome:	Gm10
Start:	21110480
stop:	21111604
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g17530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08780	AT	Annotation by Michelle Graham. TAIR10: ABI3-interacting protein 3 \| chr1:2809925-2811126 REVERSE LENGTH=129	SoyBase	E_val: 5.00E-23	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016272	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: prefoldin complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
GO:0051087	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chaperone binding	SoyBase	N/A	ISS
PTHR21100	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21100:SF6	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01920	PFAM	Prefoldin subunit	JGI		ISS
UniRef100_B9SZ63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin subunit, putative n=1 Tax=Ricinus communis RepID=B9SZ63_RICCO	SoyBase	E_val: 2.00E-22	ISS
UniRef100_I1LA68	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA68_SOYBN	SoyBase	E_val: 2.00E-34	ISS

Expression Patterns of Glyma10g17530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g17530 not represented in the dataset	Glyma10g17530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g17530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma10g17530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g17530

Limit To All Plant Sequences

>Glyma10g17530.1   sequence type=CDS   gene model=Glyma10g17530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAAGGTTTTTGCTCATGTGCCAAAGGACGAAGTTGAGAATAGGATAGAACAGATAAACAAGGTGACAAGCCAGAAATTAGAAAAACTTGAAGAGGAGAAAGAATCTATTCTTGCTCAGATGGCTGAACTCAAGAAAATTTTGTATGCGAAGTTCAATGACTCGATCAATCTTGAGGAGGATTAG

Predicted protein sequences of Glyma10g17530

Limit To All Plant Sequences

>Glyma10g17530.1   sequence type=predicted peptide   gene model=Glyma10g17530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKVFAHVPKDEVENRIEQINKVTSQKLEKLEEEKESILAQMAELKKILYAKFNDSINLEED*

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