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Report for Sequence Feature Glyma10g17370

Feature Type:gene_model
Chromosome:Gm10
Start:20849036
stop:20861588
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g17370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47930AT Annotation by Michelle Graham. TAIR10: L-galactono-1,4-lactone dehydrogenase | chr3:17684500-17687426 FORWARD LENGTH=610 SoyBaseE_val: 0ISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0019853GO-bp Annotation by Michelle Graham. GO Biological Process: L-ascorbic acid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003885GO-mf Annotation by Michelle Graham. GO Molecular Function: D-arabinono-1,4-lactone oxidase activity SoyBaseN/AISS
GO:0008762GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0016633GO-mf Annotation by Michelle Graham. GO Molecular Function: galactonolactone dehydrogenase activity SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
GO:0080049GO-mf Annotation by Michelle Graham. GO Molecular Function: L-gulono-1,4-lactone dehydrogenase activity SoyBaseN/AISS
KOG4730 KOG D-arabinono-1, 4-lactone oxidase JGI ISS
PTHR13878Panther GULONOLACTONE OXIDASE JGI ISS
PTHR13878:SF6Panther XYLITOL OXIDASE JGI ISS
PF01565PFAM FAD binding domain JGI ISS
PF04030PFAM D-arabinono-1,4-lactone oxidase JGI ISS
UniRef100_Q0ZHB8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial L-galactono-1,4-lactone dehydrogenase n=1 Tax=Lotus japonicus RepID=Q0ZHB8_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI000233C1DCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C1DC related cluster n=1 Tax=unknown RepID=UPI000233C1DC SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g17370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g17370 not represented in the dataset
Glyma10g17370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g17370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g104100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g17370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g17370
>Glyma10g17370.1   sequence type=CDS   gene model=Glyma10g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAATTACCCATTTGTCCGTAAATTTTCCAAGTTTCGCTTCCGCCACACTCACTCACTCACTCTGTACAACTCCCTTGTTTGTGAGTTGAGCGAAGCCGAAGACATGCTGAGAACTCTAGTTCTGAAGCGTTCCCTTGGTCTCCACTCGCATTTTCACCACCTCCTGCTTCGGCGATGCTCATCATCCGCGGCGCCCAACTCCTCCGCGGATGCAGAAACCCGCAAGTACGCCGGCTACGCTGCCCTCCTCCTCTTCTGCGGCGGCGCCACCTACTACACATTCCCCCTCCCGGACGACGCCAAGCACAAGAAGGCGCAGATCTTCCGGTACGCCCCGCTGCCGGAGGACCTGCACACGGTCTCCAACTGGAGCGGGACCCACGAGGTGCAGACGCGCAACTTCCTCCAGCCGGAGAACGCGGAGCAGCTGGAGCGCGCGCTGAGGGAGGCGCGGAGCCGTATCCGGCCGGTGGGGTCCGGGCTTTCGCCGAATGGTATCGGGCTTTCCAGGACCGGGATGGTGAACTTGGCTCTCATGGATGGGATCTTGGATGTCGATAAGCAGAGCAAGACTGTCAGGGTCCAGGCCGGGATTCGAGTGCAGCAGCTTGTCGATGGCCTCAAGGACCATGGTCTTACCTTGCAGAATTTTGCTTCCATTAGGGAACAGCAAATTGGTGGCATTATTCAGGTTGGTGCGCATGGAACTGGTGCTAGATTGCCTCCTATTGATGAACAAGTTATTGCCATGAAGCTGGTCACCCCTGCCAAAGGGACAATAGAGATCTCAAAAGATAAAGACCCTGAACTGTTTTATCTTGCTCGATGTGGTCTTGGGGGACTTGGAGTTGTGGCTGAAGTCACGCTTCAGTGTGTTGATCGACAGGAGCTTGTGGAGCACACAGTTGTCTCAACCATGAATGAGATTAAGAAAAATCACAAGAAATTGCTATCTGAGAACAAGCATGTTAAGTACCTTTATATCCCTTATACTGATTCTGTTGTGGTTGTGCGATGCAATCCTGTTTCCAAGTGGAAAGGTCCTCCCAAGTTCAAACCACAATATACCAAAGATGAAGCCATACAGCATGTGCGTGACCTTTACCGGGAGTCCCTCAAGAAATATGGAGCAGAAGGATCCAGGGGTAAATCAGCAGAAGATGGTGAACAAAATATAGATGAGCTTTCTTTCACAGAATTAAGAGATAAGCTAATTGCCCTAGATCCTCTCAATAAAAAGCACATCATCAGCATTAATAAAGCTGAGGCCGAGTTCTGGCGAAAGTCAGAAGGATATAGGGTTGGATGGAGTGATGAAATATTGGGCTTTGATTGCGGAGGCCAACAGTGGGTATCAGAGGCATGTTTCCCTGCTGGAAAACTAGCTAATCCAAGCATGAAAGACCTTGAATACATTGAAGAGCTGAAGCTACTTATAGAGAAAGAAGACATACCTGCACCTGCTCCAATTGAGCAGCGCTGGACAGCTAGCAGTAGGAGTTCCTTGAGTCCTGCTTCAAGTCCGTCTGGGGATGATATATTTTCTTGGGTAGGTATAATCATGTACCTCCCTACCATGGATGGTCGGCAAAGGAAAGATATAACAGAAGAGTTCTTTCATTATAGGCATTTGACTCAGGCAAAGTTATGGGATCGTTACTCCGCATATGAACACTGGGCTAAGATTGAGGTCCAACATGGTATTTGGATATGA
Predicted protein sequences of Glyma10g17370
>Glyma10g17370.1   sequence type=predicted peptide   gene model=Glyma10g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNYPFVRKFSKFRFRHTHSLTLYNSLVCELSEAEDMLRTLVLKRSLGLHSHFHHLLLRRCSSSAAPNSSADAETRKYAGYAALLLFCGGATYYTFPLPDDAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFLQPENAEQLERALREARSRIRPVGSGLSPNGIGLSRTGMVNLALMDGILDVDKQSKTVRVQAGIRVQQLVDGLKDHGLTLQNFASIREQQIGGIIQVGAHGTGARLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFYLARCGLGGLGVVAEVTLQCVDRQELVEHTVVSTMNEIKKNHKKLLSENKHVKYLYIPYTDSVVVVRCNPVSKWKGPPKFKPQYTKDEAIQHVRDLYRESLKKYGAEGSRGKSAEDGEQNIDELSFTELRDKLIALDPLNKKHIISINKAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSEACFPAGKLANPSMKDLEYIEELKLLIEKEDIPAPAPIEQRWTASSRSSLSPASSPSGDDIFSWVGIIMYLPTMDGRQRKDITEEFFHYRHLTQAKLWDRYSAYEHWAKIEVQHGIWI*






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