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Report for Sequence Feature Glyma10g17230

Feature Type:gene_model
Chromosome:Gm10
Start:20263575
stop:20290098
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g17230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10410AT Annotation by Michelle Graham. TAIR10: SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
KOG1282 KOG Serine carboxypeptidases (lysosomal cathepsin A) JGI ISS
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI ISS
PTHR11802:SF6Panther SERINE CARBOXYPEPTIDASE CPVL/CARBOXYPEPTIDASE Y(YEAST) JGI ISS
PF00450PFAM Serine carboxypeptidase JGI ISS
UniRef100_Q8L6A7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carboxypeptidase type III n=1 Tax=Theobroma cacao RepID=Q8L6A7_THECC SoyBaseE_val: 0ISS
UniRef100_UPI0001BA870BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA870B related cluster n=1 Tax=unknown RepID=UPI0001BA870B SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g17230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g17230 not represented in the dataset
Glyma10g17230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g17230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g104300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g17230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma10g17230
>Glyma10g17230.2   sequence type=transcript   gene model=Glyma10g17230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATATCACTTCCCAAACAAAATTACAGACGATTGGACATTCACTCACTAATAAGATTTTTCCATTTAAAATATTTTCCAAAGTCCAAAGTCAAACACAATCAATGATTCAAATAGCATCGTGTGTTCACTCTGTTTAGTAGCATCCAAAATGGCGCATTCTTCTGTTATAGTCTTCCTCTGCACTCTCCTTCTCTTCTTTTCTCCGTCAATTCGTGCCTCCGACGATGACGTGGCGCTGCACGCGAAGAAGCTCATCAGAGACCTCAACTTGTTCCCCGACGCTGACGTCAACATCGTTCCCGTTGCTAATTGCACCCTCCAACCCCGCAGGATCGTCGAGAAGCGCCTGAGGTTCCCGAAGCTGCTAGCTTCGGATTCCGAGCCTTCGGTTGAGGATTTGGGTCACCACGCTGGCTATTACCCCATTCAGCATTCACATGCCGCAAGGATGTTCTACTTTTTCTTCGAATCACGCAATAGGAAGGAGGATCCTGTCGTAATTTGGTTGACTGGGGGACCTGGGTGTAGCAGTGAATTGGCTTTGTTTTATGAAAATGGCCCTTTCAAAATTGCTGACAACTTGTCTCTTGTGTGGAATGAGTATGGTTGGGACAAGGCCTTCTTTGTAGAGCATCCCCAATACGCCAAGAATGACTTTTTTATTACAGGAGAATCATATGCTGGACACTATATTCCTGCCTTTGCAACTCGTATCCATCGAGGAAACAAAGCTAAAGAAGGAATTCATATAAACCTGAAGGGATTGGCCATTGGTAATGGACTTACTAACCCTGCAATTCAGTATAAAGCTTACCCTGATTATGCACTGGAAATGGGCATAATTAAGAAGGCTACACGTAACCTCCTTAACTTAGTATTGGTTCCAGCCTGTGAATCGGCAATAAAGCTGTGTGGCACTAATGGAAAGACTTCCTGTATGGCTGCATATGTAGTTTGTAATGTCATATTCAGTGACATCATGTTACATGCTGGAGATACAAATTACTATGATATCAGAAAAAAGTGTGAGGGAAGCCTTTGCTATGATTTTTCAAACATGGATAAGTTCCTGAACCAACAATCTGTTCGGGATTCACTAGGCGTTGGGAAAATTCATTTTGTTTCTTGTAGCACTGAAGTTTATGCGGCTATGTTGGTGGATTGGATGAGGAATCTTGAAGTTGGTATTCCTGACCTTCTTGAGGACGGAATCAATTTGCTTGTTTATGCTGGGGAATATGATCTAATCTGCAACTGGCTTGGTAATTCAAGATGGGTTCATGCCATGGAATGGTCTGGTCAGAAAGAGTTTGCAACCTCACTTGAAGTTCCTTTTGTTGTTGATGGATCAGAAGCCGGATTACTGAAGAGCTATGGACCTCTAAGTTTCCTTAAGGTCCATAATGCGGGTCACATGGTTCCAATGGACCAGCCCAAGGCTGCATTAGAGATGCTGAAGAAGTGGATTAATGGAACCCTTGCTGAACCTAGGGATGATAAGGAAAAATTGGTTGCTGAGATGTGATCTCTTTTATTGCTTATTTAATTAGTCTAGCAAAAGGGAACATAAATGAGAAAAGAAATTGCAGAAGTGTGACCTGTATGTAGTTTGTGTGATATGATACCACCCCCACAGCACAATTCTAAAATGACATTGTACTAAGAACTTCTATCATGGAAGAAAACCTACTATTCTAAAGGAATTCCGTATTTTCTGCTTTACATGCTTTATTTTGTTTCACATAAGATCAGATTTATGTGTGTATTTTTGAATTAGATTTCTTATTTGTCATATTTATTGTTTCCTTGAAGCATGGTATAACTGAGTTTCACTTATGACTACCATGTTAATATATGGTCGGTATTTCAATGAATTTATCACTTA
Coding sequences of Glyma10g17230
>Glyma10g17230.1   sequence type=CDS   gene model=Glyma10g17230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCATTCTTCTGTTATAGTCTTCCTCTGCACTCTCCTTCTCTTCTTTTCTCCGTCAATTCGTGCCTCCGACGATGACGTGGCGCTGCACGCGAAGAAGCTCATCAGAGACCTCAACTTGTTCCCCGACGCTGACGTCAACATCGTTCCCGTTGCTAATTGCACCCTCCAACCCCGCAGGATCGTCGAGAAGCGCCTGAGGTTCCCGAAGCTGCTAGCTTCGGATTCCGAGCCTTCGGTTGAGGATTTGGGTCACCACGCTGGCTATTACCCCATTCAGCATTCACATGCCGCAAGGATGTTCTACTTTTTCTTCGAATCACGCAATAGGAAGGAGGATCCTGTCGTAATTTGGTTGACTGGGGGACCTGGGTGTAGCAGTGAATTGGCTTTGTTTTATGAAAATGGCCCTTTCAAAATTGCTGACAACTTGTCTCTTGTGTGGAATGAGTATGGTTGGGACAAGGCATCAAACCTTTTATATGTTGATCAACCAACTGGAACTGGCTTTAGCTACAGTTCTGATTTGCGTGACATTCGTCATAATGAAGAGGGTGTCAGCAATGACCTGTATGACTTTATTCAGGCCTTCTTTGTAGAGCATCCCCAATACGCCAAGAATGACTTTTTTATTACAGGAGAATCATATGCTGGACACTATATTCCTGCCTTTGCAACTCGTATCCATCGAGGAAACAAAGCTAAAGAAGGAATTCATATAAACCTGAAGGGATTGGCCATTGGTAATGGACTTACTAACCCTGCAATTCAGTATAAAGCTTACCCTGATTATGCACTGGAAATGGGCATAATTAAGAAGGCTACACGTAACCTCCTTAACTTAGTATTGGTTCCAGCCTGTGAATCGGCAATAAAGCTGTGTGGCACTAATGGAAAGACTTCCTGTATGGCTGCATATGTAGTTTGTAATGTCATATTCAGTGACATCATGTTACATGCTGGAGATACAAATTACTATGATATCAGAAAAAAGTGTGAGGGAAGCCTTTGCTATGATTTTTCAAACATGGATAAGTTCCTGAACCAACAATCTGTTCGGGATTCACTAGGCGTTGGGAAAATTCATTTTGTTTCTTGTAGCACTGAAGTTTATGCGGCTATGTTGGTGGATTGGATGAGGAATCTTGAAGTTGGTATTCCTGACCTTCTTGAGGACGGAATCAATTTGCTTGTTTATGCTGGGGAATATGATCTAATCTGCAACTGGCTTGGTAATTCAAGATGGGTTCATGCCATGGAATGGTCTGGTCAGAAAGAGTTTGCAACCTCACTTGAAGTTCCTTTTGTTGTTGATGGATCAGAAGCCGGATTACTGAAGAGCTATGGACCTCTAAGTTTCCTTAAGGTCCATAATGCGGGTCACATGGTTCCAATGGACCAGCCCAAGGCTGCATTAGAGATGCTGAAGAAGTGGATTAATGGAACCCTTGCTGAACCTAGGGATGATAAGGAAAAATTGGTTGCTGAGATGTGA

>Glyma10g17230.2   sequence type=CDS   gene model=Glyma10g17230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCATTCTTCTGTTATAGTCTTCCTCTGCACTCTCCTTCTCTTCTTTTCTCCGTCAATTCGTGCCTCCGACGATGACGTGGCGCTGCACGCGAAGAAGCTCATCAGAGACCTCAACTTGTTCCCCGACGCTGACGTCAACATCGTTCCCGTTGCTAATTGCACCCTCCAACCCCGCAGGATCGTCGAGAAGCGCCTGAGGTTCCCGAAGCTGCTAGCTTCGGATTCCGAGCCTTCGGTTGAGGATTTGGGTCACCACGCTGGCTATTACCCCATTCAGCATTCACATGCCGCAAGGATGTTCTACTTTTTCTTCGAATCACGCAATAGGAAGGAGGATCCTGTCGTAATTTGGTTGACTGGGGGACCTGGGTGTAGCAGTGAATTGGCTTTGTTTTATGAAAATGGCCCTTTCAAAATTGCTGACAACTTGTCTCTTGTGTGGAATGAGTATGGTTGGGACAAGGCCTTCTTTGTAGAGCATCCCCAATACGCCAAGAATGACTTTTTTATTACAGGAGAATCATATGCTGGACACTATATTCCTGCCTTTGCAACTCGTATCCATCGAGGAAACAAAGCTAAAGAAGGAATTCATATAAACCTGAAGGGATTGGCCATTGGTAATGGACTTACTAACCCTGCAATTCAGTATAAAGCTTACCCTGATTATGCACTGGAAATGGGCATAATTAAGAAGGCTACACGTAACCTCCTTAACTTAGTATTGGTTCCAGCCTGTGAATCGGCAATAAAGCTGTGTGGCACTAATGGAAAGACTTCCTGTATGGCTGCATATGTAGTTTGTAATGTCATATTCAGTGACATCATGTTACATGCTGGAGATACAAATTACTATGATATCAGAAAAAAGTGTGAGGGAAGCCTTTGCTATGATTTTTCAAACATGGATAAGTTCCTGAACCAACAATCTGTTCGGGATTCACTAGGCGTTGGGAAAATTCATTTTGTTTCTTGTAGCACTGAAGTTTATGCGGCTATGTTGGTGGATTGGATGAGGAATCTTGAAGTTGGTATTCCTGACCTTCTTGAGGACGGAATCAATTTGCTTGTTTATGCTGGGGAATATGATCTAATCTGCAACTGGCTTGGTAATTCAAGATGGGTTCATGCCATGGAATGGTCTGGTCAGAAAGAGTTTGCAACCTCACTTGAAGTTCCTTTTGTTGTTGATGGATCAGAAGCCGGATTACTGAAGAGCTATGGACCTCTAAGTTTCCTTAAGGTCCATAATGCGGGTCACATGGTTCCAATGGACCAGCCCAAGGCTGCATTAGAGATGCTGAAGAAGTGGATTAATGGAACCCTTGCTGAACCTAGGGATGATAAGGAAAAATTGGTTGCTGAGATGTGA
Predicted protein sequences of Glyma10g17230
>Glyma10g17230.1   sequence type=predicted peptide   gene model=Glyma10g17230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHSSVIVFLCTLLLFFSPSIRASDDDVALHAKKLIRDLNLFPDADVNIVPVANCTLQPRRIVEKRLRFPKLLASDSEPSVEDLGHHAGYYPIQHSHAARMFYFFFESRNRKEDPVVIWLTGGPGCSSELALFYENGPFKIADNLSLVWNEYGWDKASNLLYVDQPTGTGFSYSSDLRDIRHNEEGVSNDLYDFIQAFFVEHPQYAKNDFFITGESYAGHYIPAFATRIHRGNKAKEGIHINLKGLAIGNGLTNPAIQYKAYPDYALEMGIIKKATRNLLNLVLVPACESAIKLCGTNGKTSCMAAYVVCNVIFSDIMLHAGDTNYYDIRKKCEGSLCYDFSNMDKFLNQQSVRDSLGVGKIHFVSCSTEVYAAMLVDWMRNLEVGIPDLLEDGINLLVYAGEYDLICNWLGNSRWVHAMEWSGQKEFATSLEVPFVVDGSEAGLLKSYGPLSFLKVHNAGHMVPMDQPKAALEMLKKWINGTLAEPRDDKEKLVAEM*

>Glyma10g17230.2   sequence type=predicted peptide   gene model=Glyma10g17230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHSSVIVFLCTLLLFFSPSIRASDDDVALHAKKLIRDLNLFPDADVNIVPVANCTLQPRRIVEKRLRFPKLLASDSEPSVEDLGHHAGYYPIQHSHAARMFYFFFESRNRKEDPVVIWLTGGPGCSSELALFYENGPFKIADNLSLVWNEYGWDKAFFVEHPQYAKNDFFITGESYAGHYIPAFATRIHRGNKAKEGIHINLKGLAIGNGLTNPAIQYKAYPDYALEMGIIKKATRNLLNLVLVPACESAIKLCGTNGKTSCMAAYVVCNVIFSDIMLHAGDTNYYDIRKKCEGSLCYDFSNMDKFLNQQSVRDSLGVGKIHFVSCSTEVYAAMLVDWMRNLEVGIPDLLEDGINLLVYAGEYDLICNWLGNSRWVHAMEWSGQKEFATSLEVPFVVDGSEAGLLKSYGPLSFLKVHNAGHMVPMDQPKAALEMLKKWINGTLAEPRDDKEKLVAEM*






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